PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01220.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 323aa MW: 34437.4 Da PI: 4.7181

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01220.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	33	89	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s+ Zpz_sc01220.1.g00070.1.am.mk 33 PNCPRCDSSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRSK 89 68***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	16	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	33	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MLSSHHEAMM PYAPLPPSLL VDRRYKQGAE VAPNCPRCDS SNTKFCYYNN YSLSQPRYFC 60 KGCRRYWTKG GSLRNVPVGG GCRKSRRSKS SVRSTAVSIS GGRDAAFGNQ FPGPFRPDLV 120 LEGMVSNPAN PGQAMPDVPS SGDGSSIDLA MLYAKFLNNP PADASVGAVT PESAGKMDEA 180 FDSFSVSSDL SPSVLAPGAQ LDPCHDGFGE WSGPVSSSDP HSTTSTTATT TMLCADVSVQ 240 AALGELNFAM DQSCFDSIGL PADVDNLSSW CSIVPSLSTL EDTKYDSLVS FPDDALSLHQ 300 GMMNGPHHDW SVDCQGLEAL YMP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01220.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682290.1	0.0	uncharacterized protein LOC101752604
TrEMBL	A0A2T7DDY7	0.0	A0A2T7DDY7_9POAL; Uncharacterized protein
STRING	Si002230m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-30	Dof family protein