PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01220.1.g00220.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 187aa MW: 20903.6 Da PI: 9.5504

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01220.1.g00220.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.8	6.9e-43	5	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkr 73 lppG+rF Pt+eel+++yL++k++g ++++e+vi+ +++y+v+P +L + +++ + w+fF++r++++a+g r Zpz_sc01220.1.g00220.1.sm.mkhc 5 LPPGYRFYPTEEELICFYLRNKLDGLRNDIERVIPVFEVYSVDPGQLTEiharlwGGAGQGEPWFFFCPRQEREARGGR 83 79**************************99***********8445555422337789************ PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++r+t +gyWka g+ +v++++++++g+kkt+vfy+grap+g++t+W m+eyr+ Zpz_sc01220.1.g00220.1.sm.mkhc 84 PSRTTPTGYWKAAGTPGAVYAADRRAIGMKKTMVFYRGRAPSGTRTEWKMNEYRA 138 ***************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-46	3	143	IPR003441	NAC domain
PROSITE profile	PS51005	41.742	5	181	IPR003441	NAC domain
Pfam	PF02365	7.2E-25	6	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MASGLPPGYR FYPTEEELIC FYLRNKLDGL RNDIERVIPV FEVYSVDPGQ LTEIHARLWG 60 GAGQGEPWFF FCPRQEREAR GGRPSRTTPT GYWKAAGTPG AVYAADRRAI GMKKTMVFYR 120 GRAPSGTRTE WKMNEYRALQ YDAFGTTDGS SSSAHAAAAP QNLPPQILPP GEHSFQRLRI 180 NVTSISL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-28	5	140	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-28	5	140	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-28	5	140	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-28	5	140	17	144	NO APICAL MERISTEM PROTEIN
4dul_A	3e-28	5	140	17	144	NAC domain-containing protein 19
4dul_B	3e-28	5	140	17	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01220.1.g00220.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-125	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970673.1	2e-88	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-53	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1E5URX2	2e-91	A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRING	Si002586m	9e-88	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-55	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]