PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01222.1.g00150.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 425aa MW: 45366.7 Da PI: 10.1591

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01222.1.g00150.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	28	3.6e-09	157	180	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t Zpz_sc01222.1.g00150.1.am.mk 157 CNGCPTILVYNRGATNIRCPNCRT 180 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-8	155	182	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.6E-8	157	180	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.4E-5	196	220	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MRDRTKADVV FFKRAGKSGL DDPRTTWQRG SKGAYAQRSG SLTPKDAALS SIDMRICNDE 60 TALVLHPSST IHSSANPPLI LPPPRPAPPR PGVHKSQPPP APPATVELHT SLSTCSLTPR 120 QCLTAVVCAS SIVSVRVYVQ HSLGFLGVAR EMSELVCNGC PTILVYNRGA TNIRCPNCRT 180 LNSAKSGASQ IGQLQCGRCP TSLAYQLGAS TVGCPRCRHV NPVRVRTRDR NERLSNSGPS 240 LMTPGFIRCS SSLQQDARAA QTVLVENPKT LDEKGKLPPP RAREWWSSGG RRVGGAAWTG 300 EPTRPADRAG LVGCGWPEPP MGLGRQGRGC CASARSAMHG QRSAGSPPQS SGLVGMHGSL 360 AVPRTAVQNA YYDDRLAFRC KTLSRARAPC LHLRSCWVDD VDGVVTQPGT HEHAATPAIQ 420 FPTGP

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MRDRTKADVV FFKRAGKSGL DDPRTTWQRG SKGAYAQRSG SLTPKDAALS SIDMRICNDE  60
TALVLHPSST IHSSANPPLI LPPPRPAPPR PGVHKSQPPP APPATVELHT SLSTCSLTPR  120
QCLTAVVCAS SIVSVRVYVQ HSLGFLGVAR EMSELVCNGC PTILVYNRGA TNIRCPNCRT  180
LNSAKSGASQ IGQLQCGRCP TSLAYQLGAS TVGCPRCRHV NPVRVRTRDR NERLSNSGPS  240
LMTPGFIRCS SSLQQDARAA QTVLVENPKT LDEKGKLPPP RAREWWSSGG RRVGGAAWTG  300
EPTRPADRAG LVGCGWPEPP MGLGRQGRGC CASARSAMHG QRSAGSPPQS SGLVGMHGSL  360
AVPRTAVQNA YYDDRLAFRC KTLSRARAPC LHLRSCWVDD VDGVVTQPGT HEHAATPAIQ  420
FPTGP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01222.1.g00150.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP72843	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	5e-17	LSD family protein