PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01235.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 665aa    MW: 74819.7 Da    PI: 8.2092
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01235.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-1863117357
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                     kR   t++qle+Le+ ++ ++yps++ r eL++k+gLt+rq ++WF+ rR k++k
  Zpz_sc01235.1.g00010.1.sm.mkhc  63 KRMMKTPYQLEVLESTYAVQQYPSEALRMELSAKIGLTDRQLQMWFCHRRLKDRK 117
                                     79999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1741117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-1844117IPR009057Homeodomain-like
PROSITE profilePS5007115.77558118IPR001356Homeobox domain
SMARTSM003891.3E-1660122IPR001356Homeobox domain
CDDcd000863.29E-1463118No hitNo description
PfamPF000466.2E-1663117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MDAGADAGGG VVIDGDGAAK AVEEAPAEMT PPPLAPAPAP TAGPSSASGP GAGTSGSGEK  60
PVKRMMKTPY QLEVLESTYA VQQYPSEALR MELSAKIGLT DRQLQMWFCH RRLKDRKPPA  120
KRQRCRDEEI ALPPVMAPPP VLPLPAIPLA SSDVMVGTAS PYDEPLHPTY RRGAGRSSAV  180
PRISLPDIGR RYYEPPPVLL PPPAAMQLTP SELRLIHSVE SQLGEPLRDD GPVLGIEFDP  240
LPPGAFGAPI VPEQQKPQVR SYDTKIFSRH DSKLLKASAF LPTMETPFVP NSFGGKRKST  300
VSNPPIVQPH LGSQAVHEYQ FLPEQPSATY ERASQSHYYD TPVELSNSRI SPVTSGSRLP  360
HGSEEAAPSY AFQGQTSDSG LLPQSDRSQM FSTVQGDYEM NQSTSNLNSV PVEGQFGTSH  420
ISGFENSLIS SERGVYHDDE TSRVDRKRKH NEEAKIAKEV EAHERRIRKE IEKQDMLNRK  480
REEQKRKEME RLDRERRKEE ERLLRERQRE EERFQREQRR EHERMEKFLL KQSRRAEKQR  540
QKEEIRKQKE AARQKAASER ATARRIAREY MELMEDERLE LMELAAQSKA LPSMLHLDNN  600
TLQQLDTLQG MLSQFPPQTV RLKVPFSIKP WTGSEDNVAK LLMVMMSFYF LDSFMAFLNG  660
SLLRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01235.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969494.10.0homeobox-DDT domain protein RLT2 isoform X1
TrEMBLA0A368R9720.0A0A368R972_SETIT; Uncharacterized protein
STRINGSb03g030770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.28e-74Homeodomain-like transcriptional regulator