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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zpz_sc01245.1.g00070.1.am.mk | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | GRAS | ||||||||
| Protein Properties | Length: 427aa MW: 45851.4 Da PI: 9.2307 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 314.7 | 2e-96 | 43 | 427 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse.lykalppsetsekn..sseela 79
++l+++cA+ ++ gdl++a+++ l asp +d+ Rla yf++ALa r+ ++++ ++ l +s+++ s +
Zpz_sc01245.1.g00070.1.am.mk 43 RDLIMACADLLQRGDLQAAHRAAGVLLSAASPGADAADRLAYYFARALALRVDAKTTGrVAPGLLASSSAVAAaaRSASSG 123
6799************************************************99544404444433333333333555666 PP
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskee 157
a+ +f+++ P+l+f+hltaNqaIl+a+eg++r+Hi+D+d+ +G+QWp+Llqa+a+R+ +gpp++RiTg g+ ++++
Zpz_sc01245.1.g00070.1.am.mk 124 AYLAFNQIAPLLRFAHLTANQAILDAIEGARRIHILDLDAAHGVQWPPLLQAIADRAeqgAGPPEVRITGAGA----DRDT 200
7777*****************************************************88888***********....9*** PP
GRAS 158 leetgerLakfAeelgvpfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
l tg+rL+ fA+++++pf+f++l +++++++ +L+++p+E+laVn+v+ lh+l + +l
Zpz_sc01245.1.g00070.1.am.mk 201 LLLTGSRLRAFARSIQLPFRFTPLllscssshqevagASTTTDTSLSTTLELHPDETLAVNCVMFLHKLG-GPEEL----A 276
************************999988888766444444444567899******************8.44444....5 PP
GRAS 226 evLklvkslsPkvvvvveqe.....adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
++Lk vk + P vv+++e+e d + +r++ al++ysa+f++lea++p+ s+er vE+e+lgrei+ +v +
Zpz_sc01245.1.g00070.1.am.mk 277 AFLKWVKAMAPAVVTIAEREppgggWD-HVDEMPRRVAVALDHYSAVFEALEATVPPGSRERLLVEQEVLGREIEAAVGSS 356
6*******************6653222.355899*********************************************99 PP
GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
g + + le+W ++ ++aGF+p pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+s+S+W+
Zpz_sc01245.1.g00070.1.am.mk 357 GGR---WWRGLERWGAAARAAGFTPRPLSAFAVSQARLLLRLHYpSEGYFVQEARGACFLGWQTRPLLSISSWQ 427
987...7899***************************************************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 51.865 | 16 | 406 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 7.0E-94 | 43 | 427 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 427 aa Download sequence Send to blast |
MHATFLIHPP MLLASHQRRR RVSRRNGNTT TRGAVLEAVP STRDLIMACA DLLQRGDLQA 60 AHRAAGVLLS AASPGADAAD RLAYYFARAL ALRVDAKTTG RVAPGLLASS SAVAAAARSA 120 SSGAYLAFNQ IAPLLRFAHL TANQAILDAI EGARRIHILD LDAAHGVQWP PLLQAIADRA 180 EQGAGPPEVR ITGAGADRDT LLLTGSRLRA FARSIQLPFR FTPLLLSCSS SHQEVAGAST 240 TTDTSLSTTL ELHPDETLAV NCVMFLHKLG GPEELAAFLK WVKAMAPAVV TIAEREPPGG 300 GWDHVDEMPR RVAVALDHYS AVFEALEATV PPGSRERLLV EQEVLGREIE AAVGSSGGRW 360 WRGLERWGAA ARAAGFTPRP LSAFAVSQAR LLLRLHYPSE GYFVQEARGA CFLGWQTRPL 420 LSISSWQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 1e-48 | 49 | 426 | 26 | 378 | Protein SCARECROW |
| 5hyz_A | 1e-48 | 70 | 427 | 31 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Zpz_sc01245.1.g00070.1.am.mk |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025810768.1 | 0.0 | protein MONOCULM 1-like | ||||
| Refseq | XP_025810769.1 | 0.0 | protein MONOCULM 1-like | ||||
| Swissprot | Q84MM9 | 1e-179 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
| TrEMBL | A0A3L6PE74 | 0.0 | A0A3L6PE74_PANMI; Protein MONOCULM 1-like | ||||
| STRING | Sb10g023950.1 | 0.0 | (Sorghum bicolor) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3653 | 34 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G55580.1 | 9e-71 | GRAS family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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