PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01246.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 199aa    MW: 20617.8 Da    PI: 8.5153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01246.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-131141783199
                                   .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                   +++ t  + ++ g++W+v +   + +++ +l++GW eF  a+g+ +g fvv++++g  ++ l+vk f++
  Zpz_sc01246.1.g00120.1.am.mk 114 AREATALVVSPFGKVWRVGV--GRDGEGAFLGRGWAEFLAAHGIGVGWFVVLRHEG--GGALTVKSFDT 178
                                   456789999***********..99999**************************765..77789998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.0E-10115178IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-12117181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-12117180IPR015300DNA-binding pseudobarrel domain
CDDcd100179.39E-9121177No hitNo description
PROSITE profilePS508639.446126179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MPPFVVAVIG RDRRDDFPGI SPAKLPCSST SPVAMASSGD PVAPARIKQL KVLLPRSVHK  60
MVSTIAIAVE HGCQCNITGT KLISLPGFKR ISEELAGCFD VDGAASAGGG EDGAREATAL  120
VVSPFGKVWR VGVGRDGEGA FLGRGWAEFL AAHGIGVGWF VVLRHEGGGA LTVKSFDTSF  180
CIKDFGAPAA GKHFAMAVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01246.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.21e-45putative B3 domain-containing protein Os04g0346900
TrEMBLA0A3L6FY214e-48A0A3L6FY21_MAIZE; Putative B3 domain-containing protein
STRINGSb06g002075.17e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-09B3 family protein