PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01253.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 173aa    MW: 19217.1 Da    PI: 6.9468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01253.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-056586223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +Cp C+++F++    + H+r+H
  Zpz_sc01253.1.g00070.1.sm.mk 65 SCPVCDRHFKTEKAVHGHMRSH 86
                                  8********************9 PP
2zf-C2H212.70.00038112134123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C++Cg  F ++  L  H  +H
  Zpz_sc01253.1.g00070.1.sm.mk 112 YSCEHCGSQFETRQALGGHRASH 134
                                   99**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-65386No hitNo description
PROSITE patternPS0002806486IPR007087Zinc finger, C2H2
SMARTSM003550.146486IPR015880Zinc finger, C2H2-like
PfamPF121717.3E-66686IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576676.17E-5109138No hitNo description
Gene3DG3DSA:3.30.160.606.6E-4111137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614112139IPR007087Zinc finger, C2H2
PfamPF139123.9E-6112135IPR007087Zinc finger, C2H2
SMARTSM003550.066112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDGSTQVFFV GVAYGRLLSS VAGGSGGDEP RQPWHPSSVH EADSAPAQRK QRSTSSMEEG  60
QGPCSCPVCD RHFKTEKAVH GHMRSHPDRA WRGMEEPHPT DPTAMDEKQY RYSCEHCGSQ  120
FETRQALGGH RASHNGKQGC FRLSRQPTAM AAQPRHVLPF DLNDPAPEHR EEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01253.1.g00070.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439063.23e-51zinc finger protein ZAT3
TrEMBLA0A3L6ERH03e-49A0A3L6ERH0_MAIZE; Uncharacterized protein
STRINGPavir.J33608.1.p6e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-13C2H2-like zinc finger protein