PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01260.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 877aa    MW: 96405.3 Da    PI: 10.1487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01260.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.39.7e-92594492373
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaa 80 
                                   ++lL++cA a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL +r +r   ++ + +a+++  +s   ++++++a
  Zpz_sc01260.1.g00010.1.am.mk  59 EQLLVHCASAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVTRASRtgACKAVTAAVAAAVESAALHVHRFTA 139
                                   79***************************************************9333444444444444444446666677 PP

                          GRAS  81 lkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....sk 155
                                    +l  f +++P+++f++ +aN  Ileaveg   vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ +  ++       
  Zpz_sc01260.1.g00010.1.am.mk 140 IELasFIDLTPWHRFGYTAANASILEAVEGFPVVHIVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVGSYApppaLD 220
                                   66689***************************************************************9987777777777 PP

                          GRAS 156 eeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......e 223
                                    ++ e+g +L +fA++ +++++f+v+       +++ +++l++++L  +  Eal+Vn+++ l +++de++ + s       
  Zpz_sc01260.1.g00010.1.am.mk 221 MSYDELGAKLVNFARSRNMSMDFRVVptspadaLTSLVDQLRVQQLVSDGTEALVVNCHMLLRTVPDETAGSVSlaqpvsL 301
                                   8899**********************887666555566677777777777****************998776666657767 PP

                          GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                   r+ +Lk +++l P +vvvve++ad ++++ + r+  a+++++  +d++++ lp+ se+r+++E+e +g++++nv+a+eg e
  Zpz_sc01260.1.g00010.1.am.mk 302 RTMLLKSIRTLDPALVVVVEEDADFTAGDVVGRLRAAFNFMWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVE 381
                                   999**************************************************************.*************** PP

                          GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   r+er+e   +W +r+++aGF+pv+++e+aa ++k++l++++  g+ ++ e++ +vl+Wk++++v++SaW
  Zpz_sc01260.1.g00010.1.am.mk 382 RVERQEDRTRWGQRMRNAGFRPVAFNEEAAGEVKAMLNEHA-AGWGMKREDDDIVLTWKGHNVVFASAW 449
                                   *****************************************.8899999******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.88332431IPR005202Transcription factor GRAS
PfamPF035143.4E-8959449IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MMQFTHTAPP PPPLNPNNGH GLGLGLFLDV GGAPRARPWP GTPSSKISLG NLNSTSCMEQ  60
LLVHCASAIE ANDATLTQQI LWVLNNIAPP DGDSNQRLTA AFLCALVTRA SRTGACKAVT  120
AAVAAAVESA ALHVHRFTAI ELASFIDLTP WHRFGYTAAN ASILEAVEGF PVVHIVDLST  180
THCMQIPTLI DMLASRAEGP PILRLTVADV GSYAPPPALD MSYDELGAKL VNFARSRNMS  240
MDFRVVPTSP ADALTSLVDQ LRVQQLVSDG TEALVVNCHM LLRTVPDETA GSVSLAQPVS  300
LRTMLLKSIR TLDPALVVVV EEDADFTAGD VVGRLRAAFN FMWIPYDAVD TFLPKGSEQR  360
RWYEAEVGWK VENVLAQEGV ERVERQEDRT RWGQRMRNAG FRPVAFNEEA AGEVKAMLNE  420
HAAGWGMKRE DDDIVLTWKG HNVVFASAWA PFWAIGFQAW ADEKRAHEIH YADHTRWART  480
ARCGGRLAGS QAKRAAHIGL VWLPQCFLRR PHLRCHGHTR MSRNRRMGTG VMLLAQGQAC  540
LRVELGRGGA DQGPFATAAS IFPCFAPFCR FSQTLPPCSS RHLHLSCSAK RGRRMRRGPG  600
GNVTNHRCLP AMRLIWASTF SRSLDLASER PGNVFVTFRR KLRKLIRWLL DEQIIKTLAS  660
TRSGNSESPT RYTAVRKDNR TDPPRFGPAK QPCREHERVR PPGGGLTQAS TVSDTARLPP  720
GQRGQRRWMD VAVTERIMRP AAVAVATART LKFSGEAREA HASARREFYS AARVAVPVSI  780
RDATGKACFE EVHLTRGQGG LDRAREPPRA TALGLERSSG GRIARFISWS RWWREEPCSV  840
LTPVALERTP APRPPAPHLA FPKPVSGSTD HGIKSCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B5e-503445112420Protein SHORT-ROOT
5b3h_E5e-503445112420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01260.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.10.0scarecrow-like protein 32
TrEMBLA0A3L6TA250.0A0A3L6TA25_PANMI; Transcription factor containing protein, GRAS family
STRINGTraes_2BS_FDABA21A7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-157GRAS family protein