PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01260.1.g00040.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 371aa MW: 39163.7 Da PI: 10.3147

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01260.1.g00040.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.3	5.9e-29	153	254	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++Cvl+p++ +++q +++ +++k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+ Zpz_sc01260.1.g00040.1.sm.mkhc 153 SCNGCRVLRKGCSEECVLRPCLqwietAEAQGHATVFIAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVS 231 6*******************9999777889******************************************* PP DUF260 75 Gavgvilklqqqleqlkaelall 97 Gavg++ +++++l+q+++e++l+ Zpz_sc01260.1.g00040.1.sm.mkhc 232 GAVGLLGSGSWHLCQAAVETVLR 254 ***************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.089	152	258	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-24	153	252	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MCGSTPPAKA RERVARRGTP KRATTGRTRG ASPEASPAIR SLSDGRPPLR PNAETRSRPP 60 HPWSLELSED FAASRAASLT HVHMGLPHPT PWLVRGPSIR ALGLAEPIYS LPGSPWPKLE 120 GLHARAKLGC CMRGCGSGAW TRVGALGTTT AMSCNGCRVL RKGCSEECVL RPCLQWIETA 180 EAQGHATVFI AKFFGRAGLM SFLTAVPEPQ RPAVFQSLLY EAAGRTINPV SGAVGLLGSG 240 SWHLCQAAVE TVLRGGGIHP LPEFDGGLHG ATADGREQFA FTARRPVGCS TFSAAKRATT 300 TTTTRIAAPH GAVAEPSCDL GLWLSPESPP APGDRRRRRP GTPSMTSEES VTTTTTTSSG 360 GRGPELLNLF V

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MCGSTPPAKA RERVARRGTP KRATTGRTRG ASPEASPAIR SLSDGRPPLR PNAETRSRPP  60
HPWSLELSED FAASRAASLT HVHMGLPHPT PWLVRGPSIR ALGLAEPIYS LPGSPWPKLE  120
GLHARAKLGC CMRGCGSGAW TRVGALGTTT AMSCNGCRVL RKGCSEECVL RPCLQWIETA  180
EAQGHATVFI AKFFGRAGLM SFLTAVPEPQ RPAVFQSLLY EAAGRTINPV SGAVGLLGSG  240
SWHLCQAAVE TVLRGGGIHP LPEFDGGLHG ATADGREQFA FTARRPVGCS TFSAAKRATT  300
TTTTRIAAPH GAVAEPSCDL GLWLSPESPP APGDRRRRRP GTPSMTSEES VTTTTTTSSG  360
GRGPELLNLF V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01260.1.g00040.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	1e-126	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958181.1	1e-113	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-66	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	K3ZWM9	1e-112	K3ZWM9_SETIT; Uncharacterized protein
STRING	Si031011m	1e-113	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-57	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]