PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01260.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 283aa    MW: 31246.6 Da    PI: 5.0406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01260.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-102122521055
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   r+RR+riN+++  L++l+P+      +K++ +++Le+A +Y+k Lq
  Zpz_sc01260.1.g00090.1.sm.mk 212 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAAHYVKFLQ 252
                                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.519202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13203268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11207263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-12211256No hitNo description
PfamPF000102.7E-7212252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESPYISSTP SMEIDVMEQF LGAHDHCFAY EHVDESIEAM AALFLPSLDT DSNSSSSCLN  60
HDVPPQCWPQ PDHSSSVTSF LDPAQSFEFP VMEPFPSADF DSHSAIPYFS EDCSLRGNHF  120
SVSEEEAAKD AQASKKRKSS AVTKASKKIK KVGKKNYVGN DNGGNSYAET QSSSSCTSEN  180
GNLERNANSS STKTCTRASR GAATDPQSLY ARKRRERINE RLRILQTLVP NGTKVDISTM  240
LEEAAHYVKF LQLQIKLLSS DDMWMYAPIA YNGVNISDVD LNI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01260.1.g00090.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959802.21e-146transcription factor bHLH54
SwissprotQ84WK03e-48BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A1E5UZQ71e-152A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRINGSi032445m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.14e-37root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]