PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01263.1.g00030.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 392aa MW: 42106.4 Da PI: 8.8892

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01263.1.g00030.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	5.9e-11	197	244	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++ + +sk ++Ka+ L A+ +k+L Zpz_sc01263.1.g00030.1.am.mk 197 VHSEAERRRRERINAHLATLRRVMVVP---DSKQMDKATLLATAISQLKDL 244 59***********************...9999*********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.649	193	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-13	196	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.6E-9	197	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-11	197	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-9	199	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	7.7E-4	293	349	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MKPIVVQLAP SQQGASLPPS PRMMNQGWVP NGSFYIFSIK MSKTISAARG SGTRSSRPGS 60 EDDFWRPYAD TRRRPSPEIL SADAVLPPPT EGDDDESLQF AFAIEGDGGL GRGQMSAPSC 120 RPFQTGAQQR EQRHTPAPLQ QHGVIRGRLP SSVYRGTATA LQQAISTSVP APASLQERSL 180 SSSSSGRSAA EERALKVHSE AERRRRERIN AHLATLRRVM VVPDSKQMDK ATLLATAISQ 240 LKDLRRKASE ITHPPPAVPA EADSVTVHCH PHPHPDPGAG DDDDRAPLYV HASVSCDDRP 300 GLLADIATAV CGLRLRPLRA DVASLGGRTR CSFVLCTEGG DGNMVTRSLE EDVRQVLAGA 360 AFAEMERGCG GGSTSKRQRV LEPRALYSGA MN

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MKPIVVQLAP SQQGASLPPS PRMMNQGWVP NGSFYIFSIK MSKTISAARG SGTRSSRPGS  60
EDDFWRPYAD TRRRPSPEIL SADAVLPPPT EGDDDESLQF AFAIEGDGGL GRGQMSAPSC  120
RPFQTGAQQR EQRHTPAPLQ QHGVIRGRLP SSVYRGTATA LQQAISTSVP APASLQERSL  180
SSSSSGRSAA EERALKVHSE AERRRRERIN AHLATLRRVM VVPDSKQMDK ATLLATAISQ  240
LKDLRRKASE ITHPPPAVPA EADSVTVHCH PHPHPDPGAG DDDDRAPLYV HASVSCDDRP  300
GLLADIATAV CGLRLRPLRA DVASLGGRTR CSFVLCTEGG DGNMVTRSLE EDVRQVLAGA  360
AFAEMERGCG GGSTSKRQRV LEPRALYSGA MN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01263.1.g00030.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978282.1	3e-65	transcription factor bHLH51
TrEMBL	A0A2T7E8P1	2e-64	A0A2T7E8P1_9POAL; Uncharacterized protein
STRING	Pavir.J32610.1.p	1e-62	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	1e-21	basic helix-loop-helix 32