PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01264.1.g00170.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 212aa    MW: 22395 Da    PI: 6.1549
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01264.1.g00170.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP531.3e-1611632277
                           TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77
                                  vRls+++a++++dLqd+LG+ ++sk ++WL+ + +++i++l+ ++++++++    +
  Zpz_sc01264.1.g00170.1.sm.mk 11 VRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATQHEIDKLPPQQFPPQHAQ---D 63
                                  8*******************************************99998443...2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136917.888151IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-121165IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLLERATRPA VRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IDATQHEIDK LPPQQFPPQH  60
AQDLVAHLQP TSMLTPFASA AAAATAASSV LDGDKGGIKG LMGLNNSVGL GNGAMSLAHG  120
LYFTGESWTN GGSVHDQVSH GNSPQPTVAH HSPFSSLLSL SPGPQLVFYS PEGGGFAVKE  180
ASDQFPVDNL EHWQGQLSLN SARSFLHSGS QG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01264.1.g00170.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366941e-66BT036694.1 Zea mays full-length cDNA clone ZM_BFb0132C18 mRNA, complete cds.
GenBankBT0689421e-66BT068942.2 Zea mays full-length cDNA clone ZM_BFc0170I14 mRNA, complete cds.
GenBankBT0692791e-66BT069279.2 Zea mays full-length cDNA clone ZM_BFc0043P12 mRNA, complete cds.
GenBankEU9678771e-66EU967877.1 Zea mays clone 306784 hypothetical protein mRNA, complete cds.
GenBankKJ7268261e-66KJ726826.1 Zea mays clone pUT3365 TCP transcription factor (TCP7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.13e-99transcription factor TCP13 isoform X1
RefseqXP_004961522.13e-99transcription factor TCP13 isoform X1
RefseqXP_012700333.13e-99transcription factor TCP13 isoform X1
TrEMBLK3Z8G37e-98K3Z8G3_SETIT; Uncharacterized protein
STRINGSi022830m1e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-21TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5