PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01267.1.g00120.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 324aa    MW: 33150.8 Da    PI: 8.8166
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01267.1.g00120.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.11.4e-65962444152
                          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk 82 
                                     g++sCqdCGnqakkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqlaa++++aaa++a a + r+ +++ ++
  Zpz_sc01267.1.g00120.1.sm.mkhc  96 GGVSCQDCGNQAKKDCAHQRCRTCCKSRGLSCRTHVKSTWVPAAKRRERQQQLAALAASAAATTAGAGTSRDVTKRPRA 174
                                     6789*******************************************************99999999999998889999 PP

                          DUF702  83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                                     + ++++ ++ss+++++ + ++++P+evsse vfrcvr++ vd++++e+aYqt+vsigGhvfkGiL+d G+
  Zpz_sc01267.1.g00120.1.sm.mkhc 175 RLTVATPTTSSGDQQMVTVAERFPREVSSETVFRCVRLGPVDQADAEVAYQTSVSIGGHVFKGILQDVGP 244
                                     99*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-6197244IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.6E-2699141IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.2E-20196244IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAGFPLGGGG HHSRDEPAPS VPQVHPSDAA SFLYAARAGG GLQLWQQHEH QHPFYASNVI  60
RFSSDDSPGA APLLTGAAAS SSSSRGARGS GGAVGGGVSC QDCGNQAKKD CAHQRCRTCC  120
KSRGLSCRTH VKSTWVPAAK RRERQQQLAA LAASAAATTA GAGTSRDVTK RPRARLTVAT  180
PTTSSGDQQM VTVAERFPRE VSSETVFRCV RLGPVDQADA EVAYQTSVSI GGHVFKGILQ  240
DVGPTCLASV GGSGSGPAIE YHHFRHAGDG SPPSTTPAGE AGGGGGVAGN IIVSSAVVMD  300
PYPTPGPYGA FPAGMSFFHG HPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01267.1.g00120.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308557.11e-137protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A1B6QDR91e-136A0A1B6QDR9_SORBI; Uncharacterized protein
STRINGGRMZM2G080295_P011e-136(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.15e-47Lateral root primordium (LRP) protein-related