PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01271.1.g00160.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 145aa    MW: 16109.1 Da    PI: 6.2551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01271.1.g00160.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19754455
                           AP2  4 kGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                  +GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++ a+ +++g
  Zpz_sc01271.1.g00160.1.sm.mk  7 TGVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEEAARAYDVAAVEFRG 54
                                  6******.**********7.....338***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.078562IPR001471AP2/ERF domain
PRINTSPR003672.1E-9617IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22763IPR016177DNA-binding domain
PfamPF008472.7E-12754IPR001471AP2/ERF domain
SMARTSM003804.7E-31868IPR001471AP2/ERF domain
CDDcd000181.68E-27864No hitNo description
Gene3DG3DSA:3.30.730.101.1E-29863IPR001471AP2/ERF domain
PRINTSPR003672.1E-92844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MCVARSTGVR RRPWGKWAAE IRDPHRAARK WLGTFDTAEE AARAYDVAAV EFRGQRAKLN  60
FPADAAAVSA YSSWATVQVS QQPVPQSLHE YCGLTAASPV HMAQAPAAQL WQQQGGRPAA  120
KDREEIWDGL DEILMLEDDS FWSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-204621372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01271.1.g00160.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730587e-70EU973058.1 Zea mays clone 392659 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.12e-52ethylene-responsive transcription factor ERF112
TrEMBLA0A3L6QHJ52e-51A0A3L6QHJ5_PANMI; Uncharacterized protein
STRINGPavir.J32690.1.p2e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-21ethylene response factor 110