PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01280.1.g00120.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 219aa    MW: 23724.9 Da    PI: 6.1545
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01280.1.g00120.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-10534130
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                                    +++WT+eE++ l ++v ++G g W+tI + 
  Zpz_sc01280.1.g00120.1.sm.mkhc  5 KQKWTQEEEDALRRGVVKHGAGKWRTIQKD 34
                                    79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.252161IPR017930Myb domain
SuperFamilySSF466893.81E-11251IPR009057Homeodomain-like
PfamPF002496.0E-7533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-11551IPR009057Homeodomain-like
CDDcd116605.14E-16651No hitNo description
Gene3DG3DSA:1.10.10.102.7E-676121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.99E-580119IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGAPKQKWTQ EEEDALRRGV VKHGAGKWRT IQKDPEFSPT LSSRSNIDLK DLLLPAPNKI  60
AEASAPADAE KKPLDAKNSA NTMILEALSE LNEPNGSDVS AIQGFIEVDN KYFKLTDSFA  120
TKTPALVKAS TQKPKDPSSK PLKTSKNLGP GLEAASAAAA KAADAEAKAH LAHEHMMEAE  180
RILKMAEETE SLLFLAAEIY DRCSKGEIIT VNPVSQKEF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01280.1.g00120.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3756191e-45AK375619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3099J10.
GenBankFP0945241e-45FP094524.1 Phyllostachys edulis cDNA clone: bphylf024j07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105225.18e-85single myb histone 3
SwissprotQ6WLH47e-86SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0A9PJS42e-89A0A0A9PJS4_ARUDO; Smh4
STRINGPavir.Eb02802.1.p2e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-24telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]