PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01280.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 571aa    MW: 60530.1 Da    PI: 8.8874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01280.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-05365405954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+r+ +++  L++l+P        K++ a++L +A  Y++ L
  Zpz_sc01280.1.g00170.1.am.mk 365 ARLRRERVSERLRVLQRLVPGG-----SKMDTASMLDEAASYLRFL 405
                                   599*****************95.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.56E-10347410No hitNo description
PROSITE profilePS5088814.386356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-12362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-12362415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MHSSTGGPYL TPPTHTIRAV SSRLSSPVVS PTWSGACFGF ASCRWLDAVV DVRARETTPE  60
LNLRSSSNLC TSGLIRGSSA AMDATFGWAG AGQQVDDYFS RQIGCSRFEM DDAFLGACFG  120
QQQCDGIGGE AGMCQVSSNF GGAGGCSADV EGYPLAFLSS GTGVFDASLI DAALLAFSRE  180
LGDSGAVSNG AMFSSYSCTT VGNMSSGESN NYSGGSHDAE VLSPTSIMSA MSPITPPPPL  240
FPHASSHQQA VHPKRKVPDE YTSSAAPTEP PPPTVPFPQP GCAKRRAGAA ATTSICFGVR  300
DHGGVQDPAA RHEPDTEAMA QVKELIYRAA AMRPVSLGPD PEAVAAEKPR RKNVRISSDP  360
QTVAARLRRE RVSERLRVLQ RLVPGGSKMD TASMLDEAAS YLRFLKSQVQ ELETLGTTTT  420
NGGGSSRSSA SQRCNYHNSS SPGFLGFARS SNISHAGPFW SIFALIGDRV ESARLGVSSA  480
RKGPFADGLR QQWHRATGPP ERVPQSLSTR ALYPGWAARC LKTFPFGGAC VTTRLPEFVS  540
PKRRVRLEKN APRNRKARVL PASALLPTCT L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346352EKPRRKN
2347352KPRRKN
3365370RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01280.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818336.11e-152transcription factor LATE FLOWERING-like
TrEMBLA0A2T7DHT31e-151A0A2T7DHT3_9POAL; Uncharacterized protein
STRINGPavir.Eb02901.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-27bHLH family protein