PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01282.1.g00250.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 165aa    MW: 17807.8 Da    PI: 6.2386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01282.1.g00250.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005688110123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  Cg  Fs    L  H+r+H
  Zpz_sc01282.1.g00250.1.sm.mk  88 HECAVCGLEFSMGQALGGHMRRH 110
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.27E-54168No hitNo description
PfamPF139127.9E-114366IPR007087Zinc finger, C2H2
SMARTSM003550.564466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-686115No hitNo description
Gene3DG3DSA:3.30.160.609.5E-586115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.21788115IPR007087Zinc finger, C2H2
SMARTSM003550.8988110IPR015880Zinc finger, C2H2-like
PfamPF139126.8E-1188112IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTPARQEAEE SKEMEGLRAN ADALLSLSSS SSSSRKAMAA EGVFECKTCR RRFPSFQALG  60
GHRTSHTRLQ ARTLGDHPPQ RDGRARMHEC AVCGLEFSMG QALGGHMRRH RGEAPPAVAA  120
QQQEEEAMPD LNIPLLEEDG GGSGGRTDQE PSSSGDQPQL LNLLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01282.1.g00250.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720662e-58AK372066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.14e-62zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN88e-61A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP58e-61A0A2T7DEP5_9POAL; Uncharacterized protein
STRINGBRADI2G54500.12e-54(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-23C2H2 family protein