PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01292.1.g00190.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 498aa MW: 53620.8 Da PI: 9.5787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01292.1.g00190.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	3e-07	370	402	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..... CS HLH 3 rahnerErrRRdriNsafeeLrellPkas...k 32 +h+ +Er RR++i +++ L++l+P++s + Zpz_sc01292.1.g00190.1.am.mk 370 NSHSLAERLRREKISERMKLLQDLVPSCSkmaH 402 58*************************865551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.09E-4	365	399	No hit	No description
SuperFamily	SSF47459	1.96E-7	365	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.464	367	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	370	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	370	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MHRTEAGQRC RAQDRKKKES AEPLLSYGLL LFIRNKKVYI SLKIRLCCFS VYPFTKSEQL 60 GEGAANGRQM RREKGQLSCA VVESKVKQEV LSSACCRTVR LLRCRVTVAR SMDMNNESNE 120 KGMESNRASS GAAGIPVEWQ NQFSAAFPCP PAQQQASMMD SFASAGLWAS TSQAMGLSDA 180 MSAGRGSGFL APEPGFLQQG LGHFPVDSGF IERAARASCI GGSGGGVMAA NAGFGAADQP 240 MNNAFSGSSE ALLDHQREDG NGKAETDLGR SGHGEVRSSE AAGGDCSSKG TSESKKRRRP 300 NETKLGADQV QSSNLPADSA NESVHSKDKG EESSPATTTG KSKGKGAKET SESQKEEYIH 360 VRARRGQATN SHSLAERLRR EKISERMKLL QDLVPSCSKM AHAMNGSFSD VTQMAYPSQG 420 SQDLSMRPSQ NGGEPLIHRK TTVRFAGTNE ADSRRTQWTR LETGDDDEAK ASRARPYAAR 480 ASDPTRVCAA GSPRSRWV

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MHRTEAGQRC RAQDRKKKES AEPLLSYGLL LFIRNKKVYI SLKIRLCCFS VYPFTKSEQL  60
GEGAANGRQM RREKGQLSCA VVESKVKQEV LSSACCRTVR LLRCRVTVAR SMDMNNESNE  120
KGMESNRASS GAAGIPVEWQ NQFSAAFPCP PAQQQASMMD SFASAGLWAS TSQAMGLSDA  180
MSAGRGSGFL APEPGFLQQG LGHFPVDSGF IERAARASCI GGSGGGVMAA NAGFGAADQP  240
MNNAFSGSSE ALLDHQREDG NGKAETDLGR SGHGEVRSSE AAGGDCSSKG TSESKKRRRP  300
NETKLGADQV QSSNLPADSA NESVHSKDKG EESSPATTTG KSKGKGAKET SESQKEEYIH  360
VRARRGQATN SHSLAERLRR EKISERMKLL QDLVPSCSKM AHAMNGSFSD VTQMAYPSQG  420
SQDLSMRPSQ NGGEPLIHRK TTVRFAGTNE ADSRRTQWTR LETGDDDEAK ASRARPYAAR  480
ASDPTRVCAA GSPRSRWV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01292.1.g00190.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698809.1	1e-144	transcription factor bHLH49 isoform X2
TrEMBL	A0A2S3H0H1	1e-143	A0A2S3H0H1_9POAL; Uncharacterized protein
STRING	Si029882m	1e-144	(Setaria italica)
STRING	Sb02g027430.1	1e-144	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	3e-25	bHLH family protein