PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01297.1.g00100.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 236aa MW: 26215.2 Da PI: 5.1522

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01297.1.g00100.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.5	1.5e-10	92	137	2	42
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLter 42 r+R+++t+ ql++Le+ F + n +ps+ +++e+A++l +++e+ Zpz_sc01297.1.g00100.1.sm.mk 92 RQRWQPTPMQLQVLENIFDQgNGTPSKPKIKEIAAELshhgQISET 137 89***************99**************777777766 PP
2	Wus_type_Homeobox	58.9	1.2e-19	91	138	2	49
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 +r+RW Ptp Q+++Le+++++G tP+k +i++i+aeL+++G+i+++N Zpz_sc01297.1.g00100.1.sm.mk 91 TRQRWQPTPMQLQVLENIFDQGNGTPSKPKIKEIAAELSHHGQISETN 138 689*******************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-6	86	137	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.17E-7	91	131	IPR009057	Homeodomain-like
CDD	cd00086	1.00E-4	92	128	No hit	No description
Pfam	PF00046	2.6E-8	92	137	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEWGDRGRAS GTATTVEESA GGGEPLGYVK VMTDEQVEVL RTQISVYATI CEQLVEMHRA 60 LTEHQDSISG MMFSDLYCDP LVVPGRHKIS TRQRWQPTPM QLQVLENIFD QGNGTPSKPK 120 IKEIAAELSH HGQISETNTA RSKRKQAASL PNNAESEAEA DEESLTDKKP KSDRPFLHNT 180 DRISEMHHFK TEQNQMGDMI YGSSDNLRSS GNPGQMSVYD NIVSNPSTFA GLYLVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01297.1.g00100.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	1e-116	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	3e-91	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1E5V6G7	1e-116	A0A1E5V6G7_9POAL; WUSCHEL-related homeobox 8
STRING	Sb03g038080.1	1e-116	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-47	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]