PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01329.1.g00030.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 360aa    MW: 39688.4 Da    PI: 5.6274
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01329.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-14151194447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   W+teE+ +++++ + +G g+Wk Iar++ k+Rt+ q+ s+ qky
  Zpz_sc01329.1.g00030.1.sm.mk 151 WSTEEHRQFLRGLRVYGRGDWKNIARHFVKTRTAVQVSSHAQKY 194
                                   *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.912143199IPR017930Myb domain
SuperFamilySSF466892.94E-16144199IPR009057Homeodomain-like
SMARTSM007174.4E-12147197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-11147196IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-13147197IPR006447Myb domain, plants
PfamPF002491.1E-10151194IPR001005SANT/Myb domain
CDDcd001671.63E-10151194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAAAADMGPL FTGDWSASDD VATVKYLIVM HTNNAIISDG VAGTLNSKHK NIVDILHKQF  60
PWNDRRQVTD LYFDVVVEML QGPEMMATGG IDLVNDNFGV MPLPLQLPVV EDPVMDNMDV  120
LLCPVNVVDT TRARRQPPGY PRAVRNKGRF WSTEEHRQFL RGLRVYGRGD WKNIARHFVK  180
TRTAVQVSSH AQKYYRRQES GATRQRYSIN DVGLYDAEPW AAPTNNSSGS WETLSFAGGD  240
YNNSNGYIAF GQQAPAQPAL AMNNPAPAMN NPALAMNNTA PAMNYPALAM NNNPAPVWSP  300
FQYNAGEAST GQAAWTTGDQ QMGYAAAAPP PAMEETGSFL SSGDQQGFFA TQQWMNNMYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01329.1.g00030.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-22Homeodomain-like transcriptional regulator