PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01329.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 191aa    MW: 21736.2 Da    PI: 9.6827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01329.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.88.9e-124889447
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  W+teE+ +++++ + +G  +Wk Iar++ k+Rt+  + s+ qky
  Zpz_sc01329.1.g00050.1.sm.mk 48 WSTEEHRQFLRGLRVYGRSDWKNIARHFVKTRTA--VSSHTQKY 89
                                  *****************************99998..99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.0214094IPR017930Myb domain
SuperFamilySSF466894.79E-124094IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-84483IPR009057Homeodomain-like
SMARTSM007171.4E-74492IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.6E-104493IPR006447Myb domain, plants
CDDcd001672.00E-84892No hitNo description
PfamPF002497.2E-84889IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQREVLDDDP AMDNMDMLLG PVNVVDTTRA RRQPPRYPRT LRNKGRFWST EEHRQFLRGL  60
RVYGRSDWKN IARHFVKTRT AVSSHTQKYY RRQESGVARQ QYSINDVGLY DTEPWAAPTN  120
NSSGSWETLS FARGDYNNSN GYIAFGQQAP AQPALAMNNP APAMNNPAPT MNDTTPAMNY  180
TALAMNYTDP P
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01329.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-19Homeodomain-like transcriptional regulator