PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01352.1.g00200.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 1241aa MW: 134325 Da PI: 9.8354

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01352.1.g00200.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.9	1e-07	137	165	27	55
AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55 + r ++g+f+tae Aa+a++aa+++l g Zpz_sc01352.1.g00200.1.am.mk 137 RGDRLWVGTFDTAEAAARAHDAAMLALCG 165 4589********************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	13.459	113	174	IPR001471	AP2/ERF domain
SMART	SM00380	5.1E-5	113	180	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-12	132	176	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-4	133	165	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.18E-7	136	175	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1241 aa Download sequence Send to blast
MVYPVQENPG RIRDLALEHE PRLSHVWVSQ PGTRRRIQFV SSTRSGERTK PSTSRRRHCY 60 ASTARLAAVG VRNTGSRAMS TYKYERARAH PAQNHQTRTE QTRSRAGRWS SMDHKGVTEP 120 PASPSSGGGQ RDDGRPRGDR LWVGTFDTAE AAARAHDAAM LALCGGSFNG LNFADSAWLL 180 HVQTGGALPD VQRAATEAVA EFMRRHGGGA AASSAPVPQP AASASTAMSQ HETAMEFDFL 240 AEGLLMEPPP TAVECPEDEE CAADGMELGS FVYLPSSAGS RHAASGRDEC RGDAESTRRR 300 SISLRSSIRT RRGTGRRMAP RVGFSKCETD VAKGGVLSGH PVHRMAAAAE GCRTRPAEGK 360 SCLLSCCAAH GPPSASTASC ADNSEPETNV PRHRPAHGPK HIFIPPCASP VDPPRMEFYL 420 WATSQVRLPY TVGSTSFCPV LRGRPGLSIQ RFNPCEGAKN RCLWTVPQLP VAQFRLTFSP 480 SPSPPSPFPL AAHGTVGEWR LVSSTTNFCR PKKRKHTRGE TFVTATGRTS PRRRRRRTGS 540 REPPRKRVVR MSEISLLLVV GMNQSTDLRG ASHGGGPGIP ASPSLNRSPG CGPRPTERDG 600 TFWWCLRYTP NRAAVFLLPP CPRQGLARPD GGHCCPDLWL LSLWVVRGRQ QAEALALTSI 660 ATTSKQQGAT RPPSAAGRSK RRRCRDRTRR GSLGTAPAAA PHLAESPSPE ATMLVLINKY 720 LRRTKARTGR EGKNKHGMPP GSNGGEDHMC IPGCVPVRAS KRAAAAASVT TTARTSRHNF 780 VTAAASGLLA GSRFTNHESL PALPDAYADF VAAFPQYGAF AQADAIRGEE YRHLDRHVCL 840 DYTGMNASVP STSSAAAAWQ PPFFDIAYKS VSLRTQCEGD GAAKGPAGVG PAITKRIMAS 900 LKIPEEEYTM LLTVYDYESE AAGAMAESAR RRGADVASAT FSWPSMRIHA ADLRKKLARG 960 RRRGGHRGLF VYPYLWMSAA HEQGWHDLDT FGLSLLRPDF INPSGFAGLF VRNIGIVSIV 1020 PARRCFPKLA EQGEDEFNVD TTTSFSGPLS AADAADNSDA SEEIREVDAS ENGGAEPEAA 1080 LFDAETEGQS NETEGLDHAD ALGLIAIGNR LRCISNWLVV ALQKLRYPHG EHGHPLFERG 1140 PSLAFNVFDW KGERLADRYN ISLSCGFLRN IWFADKTPGD AGAASATGGK RRKEAAAGDV 1200 GIFVVNASLG LWAFVAKFLD ADFVEKERWR YTALNQKTVE V

Sequence ? help Back to Top

Protein Sequence Length: 1241 aa Download sequence Send to blast

MVYPVQENPG RIRDLALEHE PRLSHVWVSQ PGTRRRIQFV SSTRSGERTK PSTSRRRHCY  60
ASTARLAAVG VRNTGSRAMS TYKYERARAH PAQNHQTRTE QTRSRAGRWS SMDHKGVTEP  120
PASPSSGGGQ RDDGRPRGDR LWVGTFDTAE AAARAHDAAM LALCGGSFNG LNFADSAWLL  180
HVQTGGALPD VQRAATEAVA EFMRRHGGGA AASSAPVPQP AASASTAMSQ HETAMEFDFL  240
AEGLLMEPPP TAVECPEDEE CAADGMELGS FVYLPSSAGS RHAASGRDEC RGDAESTRRR  300
SISLRSSIRT RRGTGRRMAP RVGFSKCETD VAKGGVLSGH PVHRMAAAAE GCRTRPAEGK  360
SCLLSCCAAH GPPSASTASC ADNSEPETNV PRHRPAHGPK HIFIPPCASP VDPPRMEFYL  420
WATSQVRLPY TVGSTSFCPV LRGRPGLSIQ RFNPCEGAKN RCLWTVPQLP VAQFRLTFSP  480
SPSPPSPFPL AAHGTVGEWR LVSSTTNFCR PKKRKHTRGE TFVTATGRTS PRRRRRRTGS  540
REPPRKRVVR MSEISLLLVV GMNQSTDLRG ASHGGGPGIP ASPSLNRSPG CGPRPTERDG  600
TFWWCLRYTP NRAAVFLLPP CPRQGLARPD GGHCCPDLWL LSLWVVRGRQ QAEALALTSI  660
ATTSKQQGAT RPPSAAGRSK RRRCRDRTRR GSLGTAPAAA PHLAESPSPE ATMLVLINKY  720
LRRTKARTGR EGKNKHGMPP GSNGGEDHMC IPGCVPVRAS KRAAAAASVT TTARTSRHNF  780
VTAAASGLLA GSRFTNHESL PALPDAYADF VAAFPQYGAF AQADAIRGEE YRHLDRHVCL  840
DYTGMNASVP STSSAAAAWQ PPFFDIAYKS VSLRTQCEGD GAAKGPAGVG PAITKRIMAS  900
LKIPEEEYTM LLTVYDYESE AAGAMAESAR RRGADVASAT FSWPSMRIHA ADLRKKLARG  960
RRRGGHRGLF VYPYLWMSAA HEQGWHDLDT FGLSLLRPDF INPSGFAGLF VRNIGIVSIV  1020
PARRCFPKLA EQGEDEFNVD TTTSFSGPLS AADAADNSDA SEEIREVDAS ENGGAEPEAA  1080
LFDAETEGQS NETEGLDHAD ALGLIAIGNR LRCISNWLVV ALQKLRYPHG EHGHPLFERG  1140
PSLAFNVFDW KGERLADRYN ISLSCGFLRN IWFADKTPGD AGAASATGGK RRKEAAAGDV  1200
GIFVVNASLG LWAFVAKFLD ADFVEKERWR YTALNQKTVE V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	512	534	KRKHTRGETFVTATGRTSPRRRR
2	527	536	RTSPRRRRRR
3	532	537	RRRRRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01352.1.g00200.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	1e-51	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.