PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01384.1.g00050.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

S1Fa-like

Protein Properties

Length: 135aa MW: 14925.2 Da PI: 10.4694

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01384.1.g00050.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	35.1	2.7e-11	68	100	2	33
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgny 33 +va++++ kGlnPG+i llvv+++ll+f+v y Zpz_sc01384.1.g00050.1.am.mkhc 68 NVAIEDViKGLNPGMIALLVVASFLLLFFVRKY 100 45556668**********************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.0E-7	74	100	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MWYVRAHGVI VLPHLQGGDD DQDTGAMSDG GASSASNFNI LGGLKTPPVK RKRGCPSSKR 60 DKPGYENNVA IEDVIKGLNP GMIALLVVAS FLLLFFVRKY DRRRFLLRKR IGLKEAEEGK 120 AEAGHPRQES KKLHN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01384.1.g00050.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP42961	3	3