PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01393.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 274aa    MW: 29828.9 Da    PI: 10.263
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01393.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.31.8e-157017020118
                          GRAS  20 aqalLarlselaspdgd.pmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlta 98 
                                    +a+L+ ls   s +gd ++qR++  f+eAL +r+++  ++l+ +l+ +   +  ++  +++ +  f  ++P+++++  +a
  Zpz_sc01393.1.g00010.1.am.mk  70 SSAALQYLSSVMSFAGDvALQRVVVAFAEALGRRVMQLLPGLAWSLQLKVLLPPPTAAYINSAQWsFAMLFPLIRLAAAVA 150
                                   568899999**99999549************************99988776666666666666655*************** PP

                          GRAS  99 NqaIleavegeervHiiDfd 118
                                   N+aI ea+  e+rvH++D++
  Zpz_sc01393.1.g00010.1.am.mk 151 NNAITEATPAEHRVHVVDLG 170
                                   ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.2E-1370170IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNLNQSRGKG KAEVAKEDDA EQEIWLVKKK VHHQGSGPSC AGEESSSLAT APAQPPANLG  60
GDSAGGGCAS SAALQYLSSV MSFAGDVALQ RVVVAFAEAL GRRVMQLLPG LAWSLQLKVL  120
LPPPTAAYIN SAQWSFAMLF PLIRLAAAVA NNAITEATPA EHRVHVVDLG GANPNHEDQS  180
FLSQAAGVLT QEAVRLHTRR RRRSEFAGAH TREWRVFVLQ TSQRFSGPVL PFYWITTTII  240
QRSNDRFSRH FALVRDALFY RIAAQRARQG ASWC
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01393.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-08scarecrow-like 3