PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01393.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 178aa MW: 20356.7 Da PI: 8.338

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01393.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	81.9	1.1e-25	30	159	190	321
GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ++ +L v + gEal++ + lq hrl +++ + ++ ++L+++ +l Pk++v++eq a h +e + +r+ +a++yy +lf Zpz_sc01393.1.g00020.1.am.mk 30 SVAALGVAQgwGEALVIMSTLQFHRLIADKITKAD---ALLRVLCDLTPKLMVLTEQYAYHKGEVLSNRVRNAFDYYEVLF 107 57789999999**************77766666...*************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 lea + + r vE++ll++e++n+++ceg ++ erhe+le W r+++ Zpz_sc01393.1.g00020.1.am.mk 108 RDLEAA-GGDPMMRGLVEHMLLKEELMNIISCEGVQHPERHENLEYWLPRMMR 159 999.7888***********************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.328	1	178	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-23	30	159	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MTDSHATLPW CATRYFTASP RIVLAKERPS VAALGVAQGW GEALVIMSTL QFHRLIADKI 60 TKADALLRVL CDLTPKLMVL TEQYAYHKGE VLSNRVRNAF DYYEVLFRDL EAAGGDPMMR 120 GLVEHMLLKE ELMNIISCEG VQHPERHENL EYWLPRMMRS RKSRAWHTKC QVMAASGH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01393.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303827.1	2e-34	scarecrow-like protein 3
TrEMBL	A0A368QJM9	1e-38	A0A368QJM9_SETIT; Uncharacterized protein
TrEMBL	K3ZDF1	3e-38	K3ZDF1_SETIT; Uncharacterized protein
STRING	Si024587m	5e-39	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36328	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-16	RGA-like 1