PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01417.1.g00180.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 114aa    MW: 11909.5 Da    PI: 8.5066
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01417.1.g00180.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.32.1e-2367114249
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                                   C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsr+
  Zpz_sc01417.1.g00180.1.sm.mk  67 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRY 114
                                   **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-2659114IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.50364114IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-2265114IPR004333Transcription factor, SBP-box
PfamPF031106.9E-1867113IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MDWDLKVPAS WDLAELEHDA GAAAAPAAGP SGVHRVNAAV TTGGGVGAPR RPRPAGGGGA  60
GQQCPSCAVD GCKADLSKCR DYHRRHKVCE AHSKTPVVVV AGREMRFCQQ CSRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A6e-1767114653squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01417.1.g00180.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949139e-69FP094913.1 Phyllostachys edulis cDNA clone: bphyem212i14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876170.12e-39squamosa promoter-binding-like protein 18 isoform X3
SwissprotQ49I572e-36TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A0F7LF009e-39A0A0F7LF00_ZEAMM; TGA1 (Fragment)
TrEMBLA0A287ECT56e-38A0A287ECT5_HORVV; Uncharacterized protein
TrEMBLK3YHM94e-37K3YHM9_SETIT; Uncharacterized protein
STRINGSi013747m6e-38(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-23SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]