PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01433.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 442aa    MW: 48501.1 Da    PI: 7.5713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01433.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09250292754
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   + E++RR+r+ +++  L  l+P++     +K + a++   A+eYI++L
  Zpz_sc01433.1.g00120.1.am.mk 250 KKEKQRRQRLSEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 292
                                   57*********************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.722243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-5249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6250292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-8252314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-7252292No hitNo description
SuperFamilySSF474592.42E-10252313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAKPQPAFPN PARACTPRTV SAWRRRFRQP CRTTAGNQQG FALAGPYPNS RFPLLYIAPL  60
SFSFVLIVPT NQPIASQQLF VVDLAPLAAF SEEELCMYHP HCELLMGHDT LDLDAGHPQL  120
TASSVATIPT ELSFQLFDSL DAAAAASQPT VDYFFCGADH QSTVQYEALA PAGSHHATNM  180
LRDYYPMGEQ YLPRTRAGAA LVFGAPDDES AAYMAGAFQS SPLPRPAGSR KRSRAVSGGF  240
HGGLVNGVEK KEKQRRQRLS EKYTALMLLI PNRTKDDRAT VISDAIEYIQ ELGRTVEELT  300
LLVEKKRRRR EQQGDVVDAA PAAVVAGTEA DSSEGEVVAP TPAAVQRQPI RSTYIQRKSK  360
DTFVDVRIVE EEVNIKLTKR RRDGCLAAAS RALDELRLDL VHLSGGKIGD CHIYMFNTKI  420
HPGSSVFASA VASRLIEVVD EY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01433.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643920.0BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds.
GenBankBT0645730.0BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds.
GenBankBT0689060.0BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds.
GenBankEU9650870.0EU965087.1 Zea mays clone 283712 DNA binding protein mRNA, complete cds.
GenBankEU9684900.0EU968490.1 Zea mays clone 321358 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815629.11e-167transcription factor TIP2-like
SwissprotQ5JNS01e-154TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A1E5UWC61e-174A0A1E5UWC6_9POAL; Transcription factor TIP2
STRINGPavir.Eb01270.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-44bHLH family protein