PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01453.1.g00140.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 197aa    MW: 21696.7 Da    PI: 10.4234
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01453.1.g00140.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16.1e-3348104158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  Zpz_sc01453.1.g00140.1.sm.mkhc  48 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 104
                                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-3646107IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.49847107IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-2849104IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.2E-255072IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068605272IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.2E-2581104IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTTASAAYQY PDAYYSGMVG PYGTQPGTQF QLHGLTHSRM PLPLEISEEP VYVNAKQYHG  60
ILRRRQSRAK AELEKKVVKA RKPYLHESRH QHAMRRARGN GGRFLNTKKI DNGTPNGKAD  120
PKKGNAYTLE TGIKCSSIAL PSTFCKAVQG WRPEQNAIWV QKPVPSVEFL LVGGAGRPTA  180
SSLSRIGSGP EIYGESL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2248112266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01453.1.g00140.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304143.11e-72nuclear transcription factor Y subunit A-1-like
RefseqXP_021304146.11e-72nuclear transcription factor Y subunit A-1-like
SwissprotQ945M91e-39NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A1B6QIQ62e-71A0A1B6QIQ6_SORBI; Uncharacterized protein
STRINGSb01g011220.24e-72(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-31nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]