PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01470.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 529aa    MW: 55963.6 Da    PI: 11.309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01470.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05335357123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C + F+++  L  H++ H
  Zpz_sc01470.1.g00150.1.am.mk 335 FECHYCRRNFPTSQALGGHQNAH 357
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-5332363No hitNo description
PROSITE profilePS5015711.323335362IPR007087Zinc finger, C2H2
PROSITE patternPS000280337357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MANSFQRTSE PLLSSHRSID PSLTHSSKQP LFATVDIAQD DLGWGAGRSR GKRRKDRQCP  60
CPVASRTAAA RKQTSTRKRG AAGLRVTASR CSRNGFSLLQ ERRPEKASIS SSFERLVLPG  120
VASPGHRPPP LLRSSHGIEE TTGQVRPTEL PRFRRLYSSI IQLMGDGSIA ARGLLFLHFS  180
SPQSSNPNPT PALLSPSSTT EAGRTISLSR IQSRMSKRDA PDGKTSASAG AAASIDSFSQ  240
LPFIHPGLPP PRPPRPPPSA GSTPGIRLFG IDVPPDASAT AKTASPPPPP PTGVKVTEAA  300
NVVEESAETT NTDATTTTTA GAGASGDGAG GARKFECHYC RRNFPTSQAL GGHQNAHKRE  360
RQHAKRAQFQ TAMAMHHRHH HGQYYPLVPD AAHLHVTYRH HHRFSPAPPP PHYPSWAGAG  420
RYSYYNGPGS ISQPINGSPV APSGSWRGPL GGVGVGAAFA ARSQERPAPP PSLPVPGVGG  480
EEPRLGGMAR PPGSRSFSPS TSSSSSSSSP HQLPAPPEHK ENVSLNLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01470.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0584576e-58AK058457.1 Oryza sativa Japonica Group cDNA clone:001-015-H09, full insert sequence.
GenBankAP0054056e-58AP005405.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1111C03.
GenBankAP0058716e-58AP005871.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1116H04.
GenBankAP0149646e-58AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126166e-58CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142755.11e-78Zinc finger protein
TrEMBLA0A0A9IGN12e-79A0A0A9IGN1_ARUDO; Uncharacterized protein
STRINGGRMZM2G151639_P015e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.16e-18zinc finger protein 8