PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01476.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 295aa    MW: 30765.9 Da    PI: 6.4965
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01476.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-102854127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ++++ C +++rtG C +G+rC+++H++
  Zpz_sc01476.1.g00050.1.sm.mkhc 28 PGEADCGYYLRTGGCGFGERCRYNHPR 54
                                    57899********************96 PP
2zf-CCCH36.39.4e-1279103327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                     ++ C ++ +tGtCk+G++Ck++H++
  Zpz_sc01476.1.g00050.1.sm.mkhc  79 QPVCEYYVKTGTCKFGSSCKYHHPK 103
                                     789********************96 PP
3zf-CCCH322.1e-10177198526
                                     --SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                     +C ++a++G+C+yG  Ck+ H+
  Zpz_sc01476.1.g00050.1.sm.mkhc 177 PCAYYAQNGYCRYGVACKYDHP 198
                                     8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-42754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2632755IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-82954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-43354IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-676103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42276104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-779105IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-979103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-581104IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375172200IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8176198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5176197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6176200IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MWRLGLDGSA GGGEGQEEEA AAWLPERPGE ADCGYYLRTG GCGFGERCRY NHPRDPGGTE  60
FGGGANNGAA SDFPERLGQP VCEYYVKTGT CKFGSSCKYH HPKKDGSLQA VLLNNNGFPI  120
RLASVNPVTS DGAQQTVQAG HYGIGHHGSS TTLDNRTIMN KNMYSQSGQG SLSGAQPCAY  180
YAQNGYCRYG VACKYDHPIG TVGYNSSALP LSEMPMAPYP IGFPVAALAA SSSSPDLRPD  240
YISTKDQSVN HVVSPVAAPE PADAILPKGG FPPDTATRAQ TSASGGGSSS PGDGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01476.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.17e-95zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW22e-87C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A287KRG65e-96A0A287KRG6_HORVV; Uncharacterized protein
TrEMBLA0A287KRG93e-96A0A287KRG9_HORVV; Uncharacterized protein
TrEMBLA0A287KRH37e-96A0A287KRH3_HORVV; Uncharacterized protein
TrEMBLF2E6525e-96F2E652_HORVV; Predicted protein
STRINGEMT011683e-94(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2836235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.35e-35C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]