PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01476.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 434aa    MW: 46702.1 Da    PI: 7.4368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01476.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-124571127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ++++ C +++rtGtC yGdrC+++H++
  Zpz_sc01476.1.g00070.1.sm.mkhc 45 PGEADCAYYLRTGTCAYGDRCRYNHPR 71
                                    57899********************96 PP
2zf-CCCH34.82.8e-11123148227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++C+++ +tG+Ck+G++CkF+H++
  Zpz_sc01476.1.g00070.1.sm.mkhc 123 GEKECSYYVKTGHCKFGATCKFHHPE 148
                                     5789********************96 PP
3zf-CCCH37.83.3e-12275301127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +++++C ++++tGtCk+G++Ck++H++
  Zpz_sc01476.1.g00070.1.sm.mkhc 275 PGQPECEHYMKTGTCKFGPTCKYHHPQ 301
                                     5789*********************97 PP
4zf-CCCH30.27.5e-10323347327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                       +C ++a+ G+Ck+G++CkF H++
  Zpz_sc01476.1.g00070.1.sm.mkhc 323 SQRCAYYAQHGFCKFGPTCKFDHPM 347
                                     568********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1694472IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-64471IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-94671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-65072IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619122149IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5123148IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8123148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5124148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4127147IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056274302IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5278301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4280299IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22320348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6320350IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7323347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4326345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MELQGGEESA GGGGHSGTTG LEEAFQELEV RGEKEAAEAR LPERPGEADC AYYLRTGTCA  60
YGDRCRYNHP RDRRAAASLP WGGQGWCAEH TGHSDNDRRV NGVGRTIDTM EYPERPGQPL  120
CEGEKECSYY VKTGHCKFGA TCKFHHPELG VADTSHIYPP GQPSTVSSAH PYPHFGSLQM  180
GRPPFVPGSY LPGSCPPMML SSTVMAMQGW NPYISPMNQV TPAGGQQTVQ AGHPYGLSHQ  240
SPTSSVSYGN LYAPFYPSAG PSSCNKQVHG FPERPGQPEC EHYMKTGTCK FGPTCKYHHP  300
QYFSGPNSNY MLNPLVLPHR PGSQRCAYYA QHGFCKFGPT CKFDHPMGSL SYSPSVSSLA  360
DVPVAPYPLS FPVAPMAGSP SDLRPQYTVT KESAANQPAL HGTTHGHAGS ASKVYAPHTL  420
IRSPAATATG MQAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01476.1.g00070.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967812.10.0zinc finger CCCH domain-containing protein 5
RefseqXP_025815660.10.0uncharacterized protein LOC112892755
SwissprotQ5NAV31e-152C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0A9QL050.0A0A0A9QL05_ARUDO; Uncharacterized protein
STRINGPavir.Ea00915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.21e-82C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]