PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01511.1.g00190.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 684aa MW: 75149.2 Da PI: 10.2928

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01511.1.g00190.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77	1.9e-24	402	446	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Zpz_sc01511.1.g00190.1.am.mk 402 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 446 79****************************************997 PP
2	QLQ	57.2	5.1e-20	318	353	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ+++L++Q+l+yKyL+a++ vPp+L+++i++ Zpz_sc01511.1.g00190.1.am.mk 318 PFTPAQFEELEQQALIYKYLVAGVAVPPDLVVPIRR 353 8*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.6E-11	317	353	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.4E-14	318	352	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.065	318	353	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.486	402	446	IPR014977	WRC domain
Pfam	PF08879	8.3E-21	403	445	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MEIAVFRLTF QIESWISKRS WKNETRLVAN RLGLSSSQDR WHETSKKWPE EEEEDDADFP 60 RGPSVRGAST PSVQPWQRPS DGDIFFQRGP LGQSARAQEA SVFFLIPGRG GKGGNGNGAR 120 APSCWADASK RNGLVVSGSS TSHPPPTRAP RDGTTTQRRE NPRRKIKAVR ARERAGEARH 180 LTSQPRTAQG ATQARIQQQN SRGERIKEGE AGCGEHAARE RDRRDGDAVC LSFPGRRRRG 240 RRRPPLIHHH HHHYHRLAPP LLPRLPALRV SNGGSSRLRL CDLVVVSFAR FLVLTTWGSG 300 GGLGEDAQMS GRWARPLPFT PAQFEELEQQ ALIYKYLVAG VAVPPDLVVP IRRCLDSLAT 360 RFYGHPTRTV PVLLFYLLLL TTPSLPYGFW LAYGSYFGKK LDPEPGRCRR TDGKKWRCSK 420 EAAPDSKYCE RHMHRGRNRS RKPVETQLVP QSQPPSAMAP IAAQPLTAAT SGGNFQSHSL 480 YPAIAGSNGG GEGSNISSPF TSSLSSSQLN LDNTATYAAL GGGTGKDLRY TGYGIRSLAD 540 EHNQLISDAI DSSMVNQWRL PPSHNSSFPL PSYPQLGALS DLGQSAVNSL SKIDRQPLSF 600 LGNDFGTVGS VKQENQLRPF FDEWPKSRES WPGLGDENAN LASFSATQLS MSIPMVSSDF 660 SAATPASSQS PNGEQFSKEM ETLA

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MEIAVFRLTF QIESWISKRS WKNETRLVAN RLGLSSSQDR WHETSKKWPE EEEEDDADFP  60
RGPSVRGAST PSVQPWQRPS DGDIFFQRGP LGQSARAQEA SVFFLIPGRG GKGGNGNGAR  120
APSCWADASK RNGLVVSGSS TSHPPPTRAP RDGTTTQRRE NPRRKIKAVR ARERAGEARH  180
LTSQPRTAQG ATQARIQQQN SRGERIKEGE AGCGEHAARE RDRRDGDAVC LSFPGRRRRG  240
RRRPPLIHHH HHHYHRLAPP LLPRLPALRV SNGGSSRLRL CDLVVVSFAR FLVLTTWGSG  300
GGLGEDAQMS GRWARPLPFT PAQFEELEQQ ALIYKYLVAG VAVPPDLVVP IRRCLDSLAT  360
RFYGHPTRTV PVLLFYLLLL TTPSLPYGFW LAYGSYFGKK LDPEPGRCRR TDGKKWRCSK  420
EAAPDSKYCE RHMHRGRNRS RKPVETQLVP QSQPPSAMAP IAAQPLTAAT SGGNFQSHSL  480
YPAIAGSNGG GEGSNISSPF TSSLSSSQLN LDNTATYAAL GGGTGKDLRY TGYGIRSLAD  540
EHNQLISDAI DSSMVNQWRL PPSHNSSFPL PSYPQLGALS DLGQSAVNSL SKIDRQPLSF  600
LGNDFGTVGS VKQENQLRPF FDEWPKSRES WPGLGDENAN LASFSATQLS MSIPMVSSDF  660
SAATPASSQS PNGEQFSKEM ETLA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269\|PubMed:24532604, ECO:0000269\|PubMed:26187814, ECO:0000269\|PubMed:26936408, ECO:0000269\|PubMed:27107174, ECO:0000269\|PubMed:27250747, ECO:0000269\|PubMed:27250749, ECO:0000305\|PubMed:26187814, ECO:0000305\|PubMed:27107174, ECO:0000305\|PubMed:27250747, ECO:0000305\|PubMed:27250749}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01511.1.g00190.1.am.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269\|PubMed:26187814, ECO:0000269\|PubMed:26936408, ECO:0000269\|PubMed:27107174, ECO:0000269\|PubMed:27250747}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063983	2e-76	AK063983.1 Oryza sativa Japonica Group cDNA clone:001-124-D07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791920.1	0.0	growth-regulating factor 4-like
Swissprot	Q6ZIK5	1e-158	GRF4_ORYSJ; Growth-regulating factor 4
TrEMBL	A0A2T7FAX5	0.0	A0A2T7FAX5_9POAL; Uncharacterized protein
STRING	Pavir.Aa00789.1.p	1e-176	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2463	34	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-41	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Hu J, et al. A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice. Mol Plant, 2015. 8(10): p. 1455-65 [PMID:26187814] Sun P, et al. OsGRF4 controls grain shape, panicle length and seed shattering in rice. J Integr Plant Biol, 2016. 58(10): p. 836-847 [PMID:26936408] Li S, et al. The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice. Plant Biotechnol. J., 2016. 14(11): p. 2134-2146 [PMID:27107174] Che R, et al. Control of grain size and rice yield by GL2-mediated brassinosteroid responses. Nat Plants, 2015. 2: p. 15195 [PMID:27250747] Duan P, et al. Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice. Nat Plants, 2015. 2: p. 15203 [PMID:27250749]