PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01514.1.g00050.1.es.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 256aa MW: 28419.2 Da PI: 9.9563

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01514.1.g00050.1.es.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	39.8	1.2e-12	32	117	6	97
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 ws++D i +L +l +++g ++ + v++s++ + s s+l eK+rrLK++++k v+k + s++ Zpz_sc01514.1.g00050.1.es.mkhc 32 AWSNKDSIKILEALAAHVQSEGR--LPKTNFLLAAVRDSLDrKDCSYSDLYEKVRRLKERYEKTVSK-----GVLPSEK 103 6**************999995..567899*****83579******************.....3444566 PP DUF573 84 hdqkifelskkiWg 97 ++ ++++lsk iWg Zpz_sc01514.1.g00050.1.es.mkhc 104 DELQMYHLSKAIWG 117 6779*******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.1E-17	32	117	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
KAKKPGGKPE KSGLDSTQPL SKSEKSARAP CAWSNKDSIK ILEALAAHVQ SEGRLPKTNF 60 LLAAVRDSLD RKDCSYSDLY EKVRRLKERY EKTVSKGVLP SEKDELQMYH LSKAIWGDKA 120 KGAIAASATQ NVSTATKSNK GQDNKEKMDG SSRGGTSKDA THKEEAEIGA RMLQGMRRSS 180 DELQNLYPSL AWSVETMVLQ HPCGETLKRG FEFIDDQKAN SFESKIEKQR ISEVKVQLRR 240 ADISKEVLKM LNASAD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01514.1.g00050.1.es.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571636.1	2e-61	hepatoma-derived growth factor-related protein 2
TrEMBL	I1I2T6	6e-60	I1I2T6_BRADI; Uncharacterized protein
STRING	BRADI3G20610.1	9e-61	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37