PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01526.1.g00180.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 340aa    MW: 37529.4 Da    PI: 10.5416
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01526.1.g00180.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.6e-10561173596
                                   EEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                            B3  35 tltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                    + l ++ g++W+  l++   +++g+  l +GW eFv a+g+ +g +vvF+l+    +  +v++
  Zpz_sc01526.1.g00180.1.sm.mk  56 LVLLVSPLGKVWRTALRHegGGNRGAWQLVEGWPEFVAAQGVAAGWSVVFRLECAGVA--TVRA 117
                                   588999**********995544444588999********************9764433..5555 PP
2B337.93.1e-121512271090
                                   HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                            B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                         + +p kf++eh  + ++++++  ++ ++ g+ W+v l  ++ + +++ ++GW++F + ++L e+ ++vF+++g++
  Zpz_sc01526.1.g00180.1.sm.mk 151 LE---KMKMPDKFVQEHltE-SSPSNQNAIIFSRLGKFWRVDL--ERAQMGVLRGEGWSRFLRVHDLSERNILVFRYEGNM 225
                                   33...3679*********64.4456678888999*********..9**999**************************9987 PP

                                   EE CS
                            B3  89 ef 90 
                                    f
  Zpz_sc01526.1.g00180.1.sm.mk 226 VF 227
                                   76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.02428121IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-1041123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-1050120IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-755116IPR003340B3 DNA binding domain
PROSITE profilePS508639.48857121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-15138233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-14138236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.433139235IPR003340B3 DNA binding domain
CDDcd100179.27E-10140227No hitNo description
SMARTSM010197.9E-7142230IPR003340B3 DNA binding domain
PfamPF023621.8E-9152226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALSMHRARL KYAAALLSPS CRHKLSDLCR VLDPSSHPCS VSRAEVAARL GGDGGLVLLV  60
SPLGKVWRTA LRHEGGGNRG AWQLVEGWPE FVAAQGVAAG WSVVFRLECA GVATVRAFDW  120
AGCLARFCTP LEGTMVKDRP RFFRLLRPED LEKMKMPDKF VQEHLTESSP SNQNAIIFSR  180
LGKFWRVDLE RAQMGVLRGE GWSRFLRVHD LSERNILVFR YEGNMVFSAE AFLQDGRLKE  240
YEAAAGTHIT DDIIGPSKPQ GSQPVLDSAK HPGGSPVKKK RKVSVPANKV ASKKKLDIIV  300
PQAPHHSLTK RITSYDLKSL LRKAGTTSQV QNGLCRLSAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282KKKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01526.1.g00180.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305580.12e-99putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL75e-86Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A2T7DWC31e-99A0A2T7DWC3_9POAL; Uncharacterized protein
STRINGOGLUM06G22930.16e-85(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-08B3 family protein