PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01530.1.g00040.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 528aa    MW: 57924.3 Da    PI: 5.9673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01530.1.g00040.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000373353721355
                                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                     R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Zpz_sc01530.1.g00040.1.sm.mkhc 335 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 372
                                     67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.804322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-5335377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4335380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MCRHLVWEDG YCGHPSCSVG SEASEVGCEQ GSSVCTLVRK VMKSHVYVVG QGTIGRAAVT  60
GNHQWIIHDA ANDHKLRSEM SSPDLVCQKK VNEANDPADV IVQVVKNMNR RKLPDTSDER  120
APSHLVDPTP ENDLFDILGT DFQQLYGSLD NDITWKATKP QSSTRNGPER SADLDTSSAF  180
DSVGDEFPYS GIFSLTDTDQ LLDAVISNVN PGGKQISGDS ASCKTSLTDI PSSSYCRSKE  240
AKHCESSGTP LPFKNDLAVS NFVKQPSFLE KSEDGCLSQN NGMQKSQIRL WIESGQNMKC  300
ESVSASNSKG VDTTSKTSRK RSRPGENPKP RPKDRQLIQD RIKELRELVP NGAKCSIDAL  360
LEKTIKHMLF LQSVTKHADN LKDSNESKML GGENGPLKDC FEGGATWAFD VGSQTMTCPI  420
IVEDLERPRQ MLVEMLCEDR GIFLEIADFI KGLGLTILRG VMESRKNKIW ARFTVEANRD  480
VTRMEIFLSL MHLLEPSSDG GGAGENPNNA KMPLGAVQYP VIPATGHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01530.1.g00040.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A1D6ITH10.0A0A1D6ITH1_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGPavir.Cb02031.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.18e-54conserved peptide upstream open reading frame 7