PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01530.1.g00050.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 171aa MW: 19171 Da PI: 4.2548

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01530.1.g00050.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.4	3e-10	97	141	2	46
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 Y++Y++++GFsvrk k+++ + +++i +++++Cskeg+ ++ Zpz_sc01530.1.g00050.1.sm.mkhc 97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGNVKQVVL 141 7*************************************9887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-8	97	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEGTSIAIEI DGEAICLASV EDNEPETQEN GEMQLMIYDA GGGEQVSFNS KDQGRGEDPA 60 QNEEEDRENS SVIPSREELT EELRNKIAYS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT 120 KTIRTKDYYC SKEGNVKQVV LPQSADSDWN AIEVHGCLHH AGKDVACQPL A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01530.1.g00050.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065838	7e-61	AK065838.1 Oryza sativa Japonica Group cDNA clone:J013039J03, full insert sequence.
GenBank	AL731748	7e-61	AL731748.3 Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	7e-61	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	7e-61	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441864.1	1e-70	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_021301536.1	1e-70	protein FAR1-RELATED SEQUENCE 12
TrEMBL	C5YS77	3e-69	C5YS77_SORBI; Uncharacterized protein
STRING	Sb08g003780.1	5e-70	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967