PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01542.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 517aa    MW: 54678.1 Da    PI: 7.7226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01542.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.2e-062951123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C++ F+r  nL+ H r H
  Zpz_sc01542.1.g00050.1.am.mk 29 FVCEVCNRGFPREQNLQLHRRGH 51
                                  89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-52851IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.15E-72851No hitNo description
PROSITE profilePS5015710.7412951IPR007087Zinc finger, C2H2
SMARTSM003550.00292951IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SuperFamilySSF576678.15E-7100125No hitNo description
SMARTSM00355230105125IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MHLINDDDAD PDAEVIALSP GTLLATNRFV CEVCNRGFPR EQNLQLHRRG HNLPWRLKQK  60
NPKKARRKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC NKLYGVQSDW  120
KAHSKTCGTR EYRCDCGKLF SRYPCLDSPF SIDPANFLAI ITIIFFLFFT ASESTLGIPT  180
GSREDSALPA SARPHASFLK DSFITHRAFC DALARESAQI TPLGTGLYVG SGGMALGVSG  240
GAPQMSAVFG TQAQPSAAAA AQLDHIMASF SSPSMFVSQA SASSSSFFLG DGGGPPPSQQ  300
DFSEDGDYSQ SSQSSHLLHG KTPAGFHGLM QLPEQNQQGS KASGNLLNFG FFSNNSGGAA  360
AGQDARLVIQ DQFNGNTEQR SMTASVGNHL SGNFSFLYNS PGSASASDLP QNSATALLLK  420
AAQMGSTTSS NPNCTSALLR AAGFGGNAQQ GNSAAGEGSA ADETHFHDLI MNSLASGSGG  480
TGLDDGKLST RDFLGVGRGS MAPIGVHMGA LDPAQMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-20101142344Zinc finger protein JACKDAW
5b3h_F7e-20101142344Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01542.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-142AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957598.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957599.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957600.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLK3ZSG01e-180K3ZSG0_SETIT; Uncharacterized protein
STRINGSi029540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2467946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-82indeterminate(ID)-domain 4