PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01551.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 255aa    MW: 27679.1 Da    PI: 10.4624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01551.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-074698653
                                  HHHHHHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHH CS
                           HLH  6 nerErrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIks 53
                                  + +Er+RR+++N  +++L +l+   s     +++s+  +  + Le A +YI++
  Zpz_sc01551.1.g00150.1.am.mk 46 KTVERNRRNQMNALYSRLDTLVRDGSapeaeRGGSPATTRPDRLETAAHYIRQ 98
                                  679********************95559999999999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-745115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.45E-645115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-54798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVYYYPTRKR TPTPVSWPEM AMQPPPPPPF GNPAAGGGGG FKPDRKTVER NRRNQMNALY  60
SRLDTLVRDG SAPEAERGGS PATTRPDRLE TAAHYIRQTA ERVERLRERK RELTSASSTQ  120
LGSGSSARAA EVEVQHLGSG LHAILVTGAP PSDGTSFHRA VRAVEEAGGE VQNAHFSVVG  180
ARAIYTIHTL VTAQQGGIER VVQRLRGALL QTLCARRMQS WKLESNALAD GRSTRTVLKA  240
STYATHLLSD ADGLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01551.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057561e-41AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBankAP0149581e-41AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954617.22e-78transcription factor bHLH162
TrEMBLA0A1E5VEJ31e-77A0A1E5VEJ3_9POAL; Uncharacterized protein
STRINGSi020234m6e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-12bHLH family protein