PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01557.1.g00030.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 335aa    MW: 35774.1 Da    PI: 7.3263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01557.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13173218454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    h  +Er+RR++iN++f eL +++P +     kK++Ka+iL  A+ Y+k+L
  Zpz_sc01557.1.g00030.1.sm.mk 173 HHILAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATIYVKKL 218
                                   6999***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-16161226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.821169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.78E-15172223No hitNo description
Gene3DG3DSA:4.10.280.109.5E-17173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEDSSLFMLW ALSTLQHEDP PATPGPASDA GGGHNFSSHP EPVYSASLDC KAPGEPLARE  60
GHQVTGSWSS GDTDSGGASV TAALERDGWS SLSQSSDIYA APRSGGAKQP VSWNFSSKSA  120
RPSKEFINRN CAATARATDG GGGAPLMVQE SPPPRRTNGK SSGSPSSAPY VQHHILAERK  180
RREKINQRFI ELSTVIPGLK KMDKATILSD ATIYVKKLKE KLKAHEDGGS NGHRNRNIES  240
AVLAKKPRIT APDDEDTPSS AATSGALPEI EARISEGNVM VRIHCEDFKG SLVVLLAEVE  300
KLHLSIVYAN AMPFSASTQI ISIMTQASCF ESFKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERKRRE
2178183RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01557.1.g00030.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399632e-38BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds.
GenBankKJ7267862e-38KJ726786.1 Zea mays clone pUT2107 bHLH transcription factor (bHLH71) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140525.12e-95uncharacterized protein LOC100272590
TrEMBLA0A0A9SBV56e-99A0A0A9SBV5_ARUDO; Uncharacterized protein
STRINGGRMZM2G095899_P018e-92(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-37bHLH family protein