PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01560.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 741aa    MW: 80130.2 Da    PI: 10.4985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01560.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18562611255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++a++Aa a+++a+ +l+g
  Zpz_sc01560.1.g00140.1.am.mk 562 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSADDAALAYDKAAFRLRG 611
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.54E-27561619No hitNo description
PROSITE profilePS5103222.787562619IPR001471AP2/ERF domain
SMARTSM003803.0E-35562625IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-21562619IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-30562620IPR001471AP2/ERF domain
PfamPF008473.6E-12563611IPR001471AP2/ERF domain
PRINTSPR003672.2E-9563574IPR001471AP2/ERF domain
PRINTSPR003672.2E-9585601IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MKDEHTHQAG RIRGIWGMGS GRCVWTGTRT ADLPQPPVAH GKGKHARTLR AGWDTAVPHE  60
RIRQPAGGRI ARANERTGQT MRACELRATR HQCAGVVVAG PTCLCGGGEP HKSTDGGSVA  120
GRMQVQLRFQ PLESTGIGFI TAAHPAGIVW CRGLELRLLQ SPHDASRRLC HIREARREIE  180
IEQHRRHASV VAARSTAPTP RPRRPRSVSW QALLAAAAAK CRHGAGCFIS VAIPFAEMRK  240
YQIAFDILQP AHATHGATVI CRATTFHRAA GPLAGDSSRL FTARSFVHSA RKAATRSRDD  300
LTSRAIKTPA REATSPQERR LRPHHTTNTE LLLAPPHKPS PPHSQPNPVH FPGEAERSVS  360
TSHHHGDDED RDRCRRQKLV GREKGRGFIA APRLLRLPRA IDLHTNQLSS SSSSSSDQEL  420
MKALEPFIRS ASPTSSTSTS PFSNSYSYTT SALPQDSYCF PASSSYTALP LPPPPAPTAT  480
SFSQLPPLPP SSSYASPASY TAPADAATGL THLSQAQVQV QQIQAQLLLQ QQQRSLAASF  540
LGPRAQPMKY AGVPPSAAAG KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDSADDAAL  600
AYDKAAFRLR GDAARLNFPS LRRGGAHLAG PLDASVDAKL TAICLSLDAS TNKPRTTAAH  660
PDSPKASAST TTSEGDESVH SAGSPPPGSA PSQQQQQQQQ PAPPLPEMAC LDFTEAPWDE  720
SATFHLNTFP SCDIDWDAIL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20558619163ATERF1
3gcc_A2e-20558619163ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01560.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650401e-108AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-39related to AP2 4