PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01608.1.g00220.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 388aa MW: 41200.9 Da PI: 8.4964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01608.1.g00220.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	166	185	12	31
HHHHHHHHHHHHHCTSCCC. CS HLH 12 RRdriNsafeeLrellPkas 31 RR++iN+++ L++l+P +s Zpz_sc01608.1.g00220.1.am.mk 166 RREKINERMKLLQDLVPGCS 185 9****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.2E-4	166	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDSFAWALVS RTAGLASGNA ITDARGGVLL PSMLGFQLPP PPGLEHDNFT VDSVLVDRAV 60 RSSCFGAVSD HDKVTTNGGA GEDDNAETEV GGVHSDGWTA EATAGSVLGT DQAKEPDAST 120 DSPDGSGRSN GAGAPKMKGQ GVKEARKSTP MSGRGRGRQL ITASPRREKI NERMKLLQDL 180 VPGCSKLIRF PGAPSSAPIG SSFSQEMMPK LPLLSECFIT WTARCTGQDN WHTDQISVKN 240 FCTSSISERL RDGPMFYATV GFGGLLWAAT ELDELPVHLA GVGGFAVPCE KITVRLASGH 300 RTYTTMISVS RRVGTRLASR PGIHSTPVIT TLLMVIFTLS GSGILCRRLF LVIDRAVIRY 360 RLRGKRASLE ATEDVPPPIS GDGLKAFS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDSFAWALVS RTAGLASGNA ITDARGGVLL PSMLGFQLPP PPGLEHDNFT VDSVLVDRAV  60
RSSCFGAVSD HDKVTTNGGA GEDDNAETEV GGVHSDGWTA EATAGSVLGT DQAKEPDAST  120
DSPDGSGRSN GAGAPKMKGQ GVKEARKSTP MSGRGRGRQL ITASPRREKI NERMKLLQDL  180
VPGCSKLIRF PGAPSSAPIG SSFSQEMMPK LPLLSECFIT WTARCTGQDN WHTDQISVKN  240
FCTSSISERL RDGPMFYATV GFGGLLWAAT ELDELPVHLA GVGGFAVPCE KITVRLASGH  300
RTYTTMISVS RRVGTRLASR PGIHSTPVIT TLLMVIFTLS GSGILCRRLF LVIDRAVIRY  360
RLRGKRASLE ATEDVPPPIS GDGLKAFS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01608.1.g00220.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821587.1	4e-41	transcription factor bHLH49-like
TrEMBL	A0A3L6RLL8	2e-45	A0A3L6RLL8_PANMI; Transcription factor bHLH49-like isoform X1
STRING	Pavir.Fb01828.1.p	2e-40	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33675	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	2e-07	cryptochrome-interacting basic-helix-loop-helix 5