PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01643.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 665aa    MW: 72393.8 Da    PI: 7.3575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01643.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13467513455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Zpz_sc01643.1.g00010.1.am.mk 467 SHVLKERRRREKLNERFVVLRSLVPFV-----TKMDRASILGDTIEYVKQLR 513
                                   79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-3113180IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.787463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17466531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-14467517No hitNo description
PfamPF000102.3E-10467512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-17467522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-16469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MVTSSGDAGE ATQKALQAVA QGTRWTYSLL WQLCPHQGAL VWAEGHYNGA IKTRKTVQPG  60
GHDDDGGGEE AGSGNKAARK RSRQLRELYD SLAGEAAAAA GGGVGGGEGS SAAPARRPCA  120
SLAPEDLAET EWFYLMCASY CFPPGLGLPG KAYATRRHVW LSGANQADSK VFLRAILAKV  180
EEDIGLVQYA RSIFMDQHGG HIHMVPTLSG HSTSSPIVTH IDDTPLHIKW GRHTAYPNVH  240
PHHNLNPENK PSEDEDDAAR FDTECVSDLE AKNEKGSCWQ KNFGSSEQAA TPNPGSNGLM  300
HVGVSDGARY GCSSYVDEDV DGERREEGPG QWDLLYENLC SGYLEPSAED QAIPPENAHY  360
AETVLRILRH NADRQTTSCV KTHLTVSTSS SFSRWNPKRP AVDLRNVAVS ECAPQRMLKS  420
ILFINVGSSR CKFREAPTSP PEARDVDGEG TSRTRRGQQG QAELSASHVL KERRRREKLN  480
ERFVVLRSLV PFVTKMDRAS ILGDTIEYVK QLRRRIQDLE SRPRLMTDTA PRPSPATSSH  540
ETRGYSTRAG TWTTRAAAAE PASDVISCST SSAAAAEVQV SIIESDALVE VRCPHRDGLL  600
LRVLQAVHRD LRMEVTSVQA SSAGGALIAE LRAKASMRTV KEVHGRRSSI AEVKRSIHLI  660
LSSSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471476ERRRRE
2472477RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01643.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801359.10.0basic helix-loop-helix protein A
TrEMBLA0A1E5VN500.0A0A1E5VN50_9POAL; Basic helix-loop-helix protein A
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-46bHLH family protein