PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01648.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 221aa    MW: 23826 Da    PI: 8.8572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01648.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS54.91.8e-178216888171
                          GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetger 164
                                   sP+++++  +aN aI+eav  ++++H +Dfd+s + Q +aL q La+R+ +  sl++T++ +p+s     ++ +l ++ge 
  Zpz_sc01648.1.g00030.1.am.mk  82 SPCFRLALHAANVAIVEAVGDHRAIHLVDFDVSAP-QHAALVQYLADRRVPGTSLKVTAITDPSSPfaqsQTATLPAVGEW 161
                                   9*******************************987.99************************9987888888999999999 PP

                          GRAS 165 LakfAee 171
                                   L+k+ ++
  Zpz_sc01648.1.g00030.1.am.mk 162 LKKLVDR 168
                                   9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.8131221IPR005202Transcription factor GRAS
PfamPF035146.1E-1582168IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MYTTCPPPPS SLAVAQPPRL SPVHSCREST PLAPHPDSCT PVFQPPAASP PWSHLRGHAW  60
RWPARGEQRW PGGADCSGMD GSPCFRLALH AANVAIVEAV GDHRAIHLVD FDVSAPQHAA  120
LVQYLADRRV PGTSLKVTAI TDPSSPFAQS QTATLPAVGE WLKKLVDRVG NAGLDDGGSQ  180
GRGRRELLQY PCSAQSQKGT RRQRQVVAVP FFFFLIVGKT D
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01648.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2841523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.14e-10SCARECROW-like 1