PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01659.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 194aa    MW: 21851.7 Da    PI: 4.843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01659.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-111191581054
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   ++RR+riN+++  L+el+P+      +K++ +++Le+AveY+k L
  Zpz_sc01659.1.g00040.1.am.mk 119 QKRRQRINERLRILQELIPNG-----TKVDISTMLEEAVEYVKFL 158
                                   89*****************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-13108173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.348109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-12115168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.67E-10119163No hitNo description
PfamPF000103.5E-8119158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEIECATICE ESEMIAHLQS VFWGSSDLDV DPNLPSSNIS SLIDNESFCS GLVLNITQNV  60
AFERKHDNFS SENGATLGSK RKIQTDELMI SGEEDCAVPA AMRARKKSEK DSQSRYAKQK  120
RRQRINERLR ILQELIPNGT KVDISTMLEE AVEYVKFLHL QIKLLSSDEL WMYAPLAYRG  180
INIGGHLDAL SAQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01659.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809609.11e-60transcription factor bHLH84-like
TrEMBLA0A2S3HE593e-59A0A2S3HE59_9POAL; Uncharacterized protein
TrEMBLA0A2T7EHD83e-59A0A2T7EHD8_9POAL; Uncharacterized protein
STRINGORGLA12G0196200.12e-56(Oryza glaberrima)
STRINGOBART12G13380.12e-56(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.19e-40root hair defective 6-like 4