PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01663.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 219aa    MW: 23778.8 Da    PI: 8.3262
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01663.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.62.3e-4593184394
                         NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 
                                   ++d++lPianv+rimk vlP +akisk aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y++++
  Zpz_sc01663.1.g00010.1.am.mk  93 AHDNLLPIANVGRIMKDVLPPQAKISKRAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDNYADTM 173
                                   6899***************************************************************************** PP

                         NF-YB  84 kvylkkyrele 94 
                                   + yl++yre e
  Zpz_sc01663.1.g00010.1.am.mk 174 RRYLQRYRESE 184
                                   *********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-4292192IPR009072Histone-fold
SuperFamilySSF471133.19E-3395187IPR009072Histone-fold
PfamPF008088.9E-2498161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.2E-15125143No hitNo description
PRINTSPR006159.2E-15144162No hitNo description
PRINTSPR006159.2E-15163181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
LYYCASAREL SSSAVVSTLI RLDPRPRAVA LDAIIVAMRG PHGLSADVAR LGHPSITPSP  60
PQEKNAASLA APARASSSAS TEVDGGGGGM NSAHDNLLPI ANVGRIMKDV LPPQAKISKR  120
AKETIQECAT EFIGFVTGEA SERCRRERRK TINGDDICHA MRSLGLDNYA DTMRRYLQRY  180
RESEELAAAI NSSSGREIQI DVRDELSIFR GSEQRQDKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-3794182492Transcription factor HapC (Eurofung)
4g92_B7e-3794182492Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01663.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972332.19e-76nuclear transcription factor Y subunit B-4
SwissprotO040271e-42NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2T7DBX61e-76A0A2T7DBX6_9POAL; Uncharacterized protein
STRINGPavir.Eb03825.1.p1e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-44nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]