PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01680.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 1022aa    MW: 112001 Da    PI: 7.9721
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01680.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.68.6e-12064710162374
                          GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80  
                                    ++lL++cA+ v+++d + a  lL++++++as++gd  qRla++f+++L+arla+++s++yk++++++ +    ++ l+a
  Zpz_sc01680.1.g00160.1.am.mk  647 ETLLIHCAQSVATDDRRSAVDLLKQIRQHASSNGDGDQRLAHCFANGLEARLAGNGSQIYKSFTMTRFA---CTDLLKA 722 
                                    789***************************************************************999...9****** PP

                          GRAS   81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157 
                                    ++l+  ++P+ k+sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +++
  Zpz_sc01680.1.g00160.1.am.mk  723 YQLYLAACPFKKISHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPKLRITGIDTPQPGfrPTKR 801 
                                    ******************************************************************************* PP

                          GRAS  158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 
                                    +eetg+ L+++A++++vpfef++ +a+r +++++e+L+++++E l+Vn++++ ++l+desv  es+r+ vL+++++++P
  Zpz_sc01680.1.g00160.1.am.mk  802 IEETGRYLKDYAQTFNVPFEFQA-IASRYQAVQIEDLHIEKDELLIVNCMFKFKTLMDESVVAESPRNMVLNTIRKMNP 879 
                                    ***********************.7****************************************************** PP

                          GRAS  237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 
                                    +v+++   + ++n++ F+ rf eal +ysa+fd+le+++pr++e+r  +E +l+gre+ nv++ceg er er et+++W
  Zpz_sc01680.1.g00160.1.am.mk  880 HVFIHGIINGSYNAPFFVSRFREALFHYSAIFDMLETNIPRDNEQRLLIESALFGREAINVISCEGLERLERPETYKQW 958 
                                    ******************************************************************************* PP

                          GRAS  316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                                    + r ++aGFk++p++++++k a+  +r +++d +  +e++ +l++gWk+r L+++S W+
  Zpz_sc01680.1.g00160.1.am.mk  959 QVRNQRAGFKQLPINQDIMKRAREKVRCYHKD-FIFDEDNRWLLQGWKGRILFALSTWK 1016
                                    ******************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.493620997IPR005202Transcription factor GRAS
PfamPF035143.0E-1176471016IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MIVWQRGRGP APQGRSLTCR SAAPRPNSLR RARAWRRRGW PGTTTWLPET WVKSQSGRDT  60
TLPMGPAAPH QRILGANRPY AVPHLNRPPQ PPAVTRAADC GPGARARRMP GLVSLFPLLP  120
VLMRGPDQPA PLERHWSAAS TTSAFLLSLS RVVSALSPSS PGVIRAVAGL ERHLDELGHL  180
RDSVLCAHGS LGLVSAPRRV DLDTASCCAA GVVPIVMDAG MHELCTLLPG SKRDGHLPVY  240
RQIGAAGAGA SGFMMDELEA LLFMPPDGIA SAASGGGYLN VAPSIVVPPA STNRASPPRG  300
ASAAPAAGQP DDSEAFSDIV LGYINRMLMA EDIDEKFEHY PEHGALLAAE KPFLEILADQ  360
PASSGGSAVD SPDGSSVTTN SCSSLGSCGC AAAAHDGLGA EGTSLLDFPT APFLQPPQLY  420
GDLSPDGSVV ESGDAWPTEL YQLRTNPLPE TLLSQSSSFG SSNGSGATVP DGFESLLTSP  480
GFMPVVGFTE FALQSQQAMH FSRGLEEASR FLPDESKLVI DLEKSTSVPS LPSNVKEEKK  540
FVEVKTEKPE VESAAHRGKK HFYGDDLDAE EGRCTKHSAL AIDTDHLVRE MMDKVLLCNG  600
ETCSKGVKEL REALQNEKHS RGGHGKGSGH GKGRGKKQPK KEVVDLETLL IHCAQSVATD  660
DRRSAVDLLK QIRQHASSNG DGDQRLAHCF ANGLEARLAG NGSQIYKSFT MTRFACTDLL  720
KAYQLYLAAC PFKKISHFFA NQTIMNAVEK AKKVHIVDYG IYYGFQWPCL IQRLSTRPGG  780
PPKLRITGID TPQPGFRPTK RIEETGRYLK DYAQTFNVPF EFQAIASRYQ AVQIEDLHIE  840
KDELLIVNCM FKFKTLMDES VVAESPRNMV LNTIRKMNPH VFIHGIINGS YNAPFFVSRF  900
REALFHYSAI FDMLETNIPR DNEQRLLIES ALFGREAINV ISCEGLERLE RPETYKQWQV  960
RNQRAGFKQL PINQDIMKRA REKVRCYHKD FIFDEDNRWL LQGWKGRILF ALSTWKPDHR  1020
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-5365010168375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01680.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970541.10.0scarecrow-like protein 9
TrEMBLA0A1E5VF220.0A0A1E5VF22_9POAL; Scarecrow-like protein 9
STRINGPavir.Eb03680.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-174GRAS family protein