PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01696.1.g00210.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 498aa    MW: 54948.6 Da    PI: 4.6945
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01696.1.g00210.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.8e-35751672103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y+++ +++l+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         we
  Zpz_sc01696.1.g00210.1.sm.mkhc  75 FLSKTYDLVTESALDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WE 144
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F+h+ F +++k+ll++i r++s+
  Zpz_sc01696.1.g00210.1.sm.mkhc 145 FAHEDFLRDNKHLLKRIVRRRSS 167
                                     *******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3771164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5571164IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.54E-3371164IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-167598IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-3175164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-16113125IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340114138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-16126138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MNPDRARSDA PDVPYPDASA SMEALLVPKL DAEAALPLSP PGPFVPLDQV MPAEPVPDPP  60
RPLEALLQGP QLPPFLSKTY DLVTESALDG VISWGAAGNS FVVWDPSTFA RDVLPHHFKH  120
NNFSSFVRQL NTYGFRKVHA DRWEFAHEDF LRDNKHLLKR IVRRRSSPTQ QSSIQPASSS  180
GDSSLDPELH TLRREKIALL QEVARLKQEQ SQTIEHMSTL NKRLDTAEDR QKQMISFLAK  240
LLQNPAFVRQ LKLHREQKEI DSCRMKRKFL KHVPHGSIES GESSSLHTGE GGSHFPASSH  300
MAVQDDIADL QNFLLGDDDF NFGMNAENIG LEGVEEPEDI GALVQGFNAQ DVLGSGAELL  360
EMPTSSAPLG QDPTIGRHKG KNVLCPGLDA TSSEADCLGS LSENMGVLSG TMLETAPDDE  420
PMWSMDTSAA LQSSCSGSSQ QPYSSLASDP YLMEIANKPE KFWDLDFQPL DEGDLQLDKC  480
AIDDPTLQQQ QQRNLKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-236716711123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01696.1.g00210.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3L6QHX90.0A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRINGPavir.Ab01320.1.p0.0(Panicum virgatum)
STRINGSi016943m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.16e-71heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]