PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01708.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 395aa    MW: 42783.2 Da    PI: 6.5056
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01708.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-065999440
                        zf-B_box  4 rkCpeHeekelqlfCedCqq.llCedCllee.Hkg..Htvv 40
                                    r+C ++   ++  +C++C+  +lC++C     H g  H++v
  Zpz_sc01708.1.g00070.1.sm.mkhc 59 RRCGLCMAAPAAVHCRSCGGvFLCASCDARPaHAGagHERV 99
                                    79****************876********999987889875 PP
2zf-B_box26.81.1e-0899144342
                        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                      ++C+ +e  ++   C+ +   lC+ C   +H+       H++vp+
  Zpz_sc01708.1.g00070.1.sm.mkhc  99 VWVCEVCETAPADVMCKADAAVLCAACDADIHEAnplarrHRRVPI 144
                                     689*****************************77899999**9997 PP
3CCT70.44.7e-24317360144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Zpz_sc01708.1.g00070.1.sm.mkhc 317 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 360
                                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.04256101IPR000315B-box-type zinc finger
CDDcd000210.0011359101No hitNo description
PROSITE profilePS5011911.03597144IPR000315B-box-type zinc finger
PfamPF006438.4E-798144IPR000315B-box-type zinc finger
CDDcd000216.41E-8100144No hitNo description
SMARTSM003364.2E-9102144IPR000315B-box-type zinc finger
PfamPF062037.4E-18317359IPR010402CCT domain
PROSITE profilePS5101716.896317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYRASFHYAA PPPSAPLPFP LAIAGANRAE LLATIAKRDR AAPPVTMMEL HKYWGVGGRR  60
CGLCMAAPAA VHCRSCGGVF LCASCDARPA HAGAGHERVW VCEVCETAPA DVMCKADAAV  120
LCAACDADIH EANPLARRHR RVPIAPIGSA AADSMLFGGA AEEEQKETEH EQHSLNLNVE  180
AKDMKLDYLF SDLDPYLNVE LPRFHHADSV VPSGVAVELD FTGGIGVKQP SYSSYTATSL  240
APSGSSSEVS VVPDALYVGG GHGSFELDFT RPKHQAYIPY TATPPSHSVA SVDAAELVPD  300
QRGEAFAVPR PVSDEGREAR LMRYREKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRT  360
DTDTDADDAE AEAEADVPKP SSYMLDFGYS VVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01708.1.g00070.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641209.11e-153zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A3S6H6461e-171A0A3S6H646_9POAL; Constans-like protein
STRINGOPUNC06G21040.11e-155(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-48CONSTANS-like 5