PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01718.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 909aa    MW: 101198 Da    PI: 9.2281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01718.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.88e-27747807158
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   ldDg++WrKYGqKe+ g+++prsY+rCt++   +Cp++k+v+r++ dp v++++Y+g H +
  Zpz_sc01718.1.g00030.1.am.mk 747 LDDGFSWRKYGQKEILGAKYPRSYFRCTYRstqNCPATKQVQRTEGDPLVFDVVYHGAHSC 807
                                   59**************************99899**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF119558.7E-9461357IPR021099Plant organelle RNA recognition domain
Gene3DG3DSA:2.20.25.809.4E-27734808IPR003657WRKY domain
SuperFamilySSF1182902.75E-24741807IPR003657WRKY domain
PROSITE profilePS5081121.735742806IPR003657WRKY domain
SMARTSM007741.6E-39747809IPR003657WRKY domain
PfamPF031063.0E-25748807IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MEAKLLLPFP SAAAAPPPKS LFLGAAVPLH PRALPPPSPL RLLRTRRAGV VVAQAAVKRR  60
KEVPFDNVIQ RDKKLKLVLK LRNILVSQPD RVMSLRDLGR FRRDLGLTRK RRLIALLKRF  120
PGVFEVVEEG VYSLKFRLTP AAERLYLDEL QLKNESEGLA VAKLRKLLMM SQEKRMLLEK  180
IAHLKHDLGL PPEFRDTICL RYPQYFRVVR MDRGPGLELT HWDPELAVSA AEIAEEENRA  240
REEEERNLII DRPLKFNRVK LPKGLKLTRG EARRLAQFKE IPYISPYSDF SHLRSGSAEK  300
EKHACGVVHE RTLVDHLTHF REEFRFSQSL RGMLIRHPDM FYVSFKGDRD SVFLREARGV  360
ARTGEEEQGA NGAVQLSDEG SDAEDDEDEG LSDMEDLISE LSGGKSDTDY QWGDGWFVNK  420
SRGPSCSAAA QLAPSNFPVK RNPTPASDVD DGHGRASWHG GWLKNKQDLD RSRPAGKPSL  480
CRGNPSCLDD FSFPPFRNAC VRVAGDATGS RRAASPMTPS VSFQHSSSLA APLPDMTPRR  540
RVPQQRCEFL PEPARRLPGS CSVLPRLVRG RACRGPAHRR NLHGNIPRTD PATLIRLAHA  600
SACCKRRCKE TTATRANKGE EEELIKPAGM DESGSGGGRR TLASELARVQ TIVRELEANM  660
DQQDLPAAAR EICGELASRV DKSLRIARSW VPGSASDWST RGDGDTAGTG DAATDAQFKR  720
RQVDCSKGKP SVQRQVRVAS VHDTAALDDG FSWRKYGQKE ILGAKYPRSY FRCTYRSTQN  780
CPATKQVQRT EGDPLVFDVV YHGAHSCVQA AQRSADQQHL PPGLAGQEQT SPRAPETGGG  840
LHAGFEPMTP FFSSAPAGAD FGGLSPMSLE WQLRSGYGAG MEFERQLEEF FSNPCDSFQW  900
DYQDLYAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-18747807868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01718.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961165.10.0protein ROOT PRIMORDIUM DEFECTIVE 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-28WRKY family protein