PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01821.1.g00110.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 311aa    MW: 33798 Da    PI: 4.9347
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01821.1.g00110.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-075193541
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                     C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Zpz_sc01821.1.g00110.1.sm.mkhc 51 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 93
                                    7******99*********************6678888888877 PP
2zf-B_box27.47.2e-09101132334
                        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeH 34 
                                      ++C+ ++ek + +fC +++ l+C+dC + +H
  Zpz_sc01821.1.g00110.1.sm.mkhc 101 LPRCDVCQEKAAFIFCVEDRALFCQDCDEPIH 132
                                     689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-124794IPR000315B-box-type zinc finger
PROSITE profilePS501199.7984794IPR000315B-box-type zinc finger
CDDcd000216.21E-75094No hitNo description
PfamPF006431.6E-55194IPR000315B-box-type zinc finger
SMARTSM003362.0E-1399146IPR000315B-box-type zinc finger
PROSITE profilePS501198.81699146IPR000315B-box-type zinc finger
PfamPF006437.8E-7101142IPR000315B-box-type zinc finger
CDDcd000211.64E-7102132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSPSRRTDLS PLPPFVFFFH VRFHRSGLIL SCSIQWFLSG QRAKLEGMKI QCDACEGAAA  60
TVVCCADEAA LCARCDVEIH AANKLASKHQ RLPLEALSAR LPRCDVCQEK AAFIFCVEDR  120
ALFCQDCDEP IHVPGTLSGN HQRYLATGIR VGFGSASGCS GADSGGAHDA DHHAPQKAAA  180
EQAPSSQTTT NTTASAEAQQ VPSPPQFLPQ GWAVDELLQF SDYETGDQMQ KESPLGFKEL  240
DWFADVDLFQ DQAPKAGRMA AMVPEMFGSQ AVNDAAYYRP SKATANVRQS KKARIEVPDD  300
EDDYLLVPDL G
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01821.1.g00110.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953029.11e-152B-box zinc finger protein 25
SwissprotQ962889e-74BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A368PNF31e-150A0A368PNF3_SETIT; Uncharacterized protein
STRINGSb04g025400.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-72DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]